Candidatus Paraluminiphilus aquimaris: E0F26_04315
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Entry
E0F26_04315 CDS
T09832
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paqm03016
]
E0F26_04315
Enzymes [BR:
paqm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E0F26_04315
Transfer RNA biogenesis [BR:
paqm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E0F26_04315
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
Rrp44_S1
S1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UZP74014
LinkDB
All DBs
Position
complement(937386..939395)
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AA seq
669 aa
AA seq
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MLDKNALSQLQGLKDQIEADKEYAEGIVKATRHRFGFVVLDDNREIFLAPDEMQRVLPGD
RVSIVIKPVASNDKKAKSQTAGELEKLLSTSVDCFVGEVVQKGKAFFIAPDVPELANFTR
WLFIPPNARSGAKQGDLVQCQLQRHPFGDGKPAVKVLQNLGNMHTPGIENEYCALRAGIA
RYLPKTSVQSLDQALKTMPDTAAARTDFTALPLVSIDAASTTDIDDAICAESIEDGWKLS
VAIADPSALIGHSSSMTKVIAERGTSHYFHGTAIPMLPDSVSKPAALAPAENRPAIVCQL
TIAATGETSNASLALGTVCSKAKLSYQEVDGIIEGNTDHDMSAEIATLHACFQALRSWRE
QNELVIEHRTDYRWILDETKQIGSIEPVAKRTSQILVEECMVAANKAIASELRASDKPGP
FVTHAGIRRDKSDEAKEFLNRFLPEMAETDFSTIEGFRALINALNAATDERPLRAMINRL
MARASFSVKAAPHMGMAVPLYTNGTSPLRKALDYCVHLQLKAMLGDTSVTPAQATVFDAI
NQASAKNRQAVNTAQNWLTCNFLNKLAAGGENQFDASVVHINTSGFTVRLDKNGLEGVID
LRSHNDKFSFDKWEMSLKSKNARFVLGQQIRVEYQPTEKPRGTQAAFSILASSSVTASDS
GATDDTQKT
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgctagataaaaacgccctctcacagcttcagggcctcaaagatcaaatcgaagccgac
aaggaatacgccgagggaatcgtcaaggccacgcgtcaccgatttggttttgttgttctt
gatgacaaccgcgagatctttcttgcacccgacgagatgcagcgagtgcttcctggcgat
cgtgtctccattgtcataaagccggtagcgtcaaacgacaagaaggccaaatcccagaca
gccggggagttggaaaaactactgagcacgagcgttgattgctttgttggcgaagttgtt
caaaaaggaaaggctttttttatcgcgcccgatgtaccggaattagccaacttcactcga
tggctgtttattcctcccaacgcgcgatctggcgctaaacagggcgacctcgttcaatgt
cagttgcaacggcacccgtttggcgatggcaaacctgcggtaaaagtacttcagaaccta
ggtaacatgcatacaccaggaatcgagaacgagtactgcgcattgcgcgcgggcatcgct
cgatacctgccaaaaacgtccgttcaatcgttggaccaggcattaaaaacgatgcctgac
acagccgcagcgcgaacagacttcaccgctctgccgctagtgagcattgacgctgcatcg
actactgacatagatgatgcaatctgcgccgagtcgatcgaagatggctggaaactcagt
gtggcgattgcagatccgagtgctttgatcggtcactccagctcgatgacaaaagttatc
gcggaacggggcacgtcgcactacttccatggcactgctattcccatgttgcctgactcg
gtttcaaaaccggccgcgcttgcacccgccgaaaaccgccctgccattgtttgtcagctg
acaattgccgcaacgggtgagacctcaaatgcctcgctcgcgcttggcactgtgtgctct
aaagctaagctgagttaccaagaggtcgatggcattattgagggcaacactgaccacgac
atgtcagcagagatcgccaccttacacgcgtgctttcaggccctgaggtcttggcgcgag
cagaacgaattagtgattgagcacagaaccgactatcgatggatactcgatgagaccaag
cagatcgggagcattgagcctgtcgcaaaacgcacctcacaaatcctcgtcgaggagtgc
atggtcgccgccaacaaagcgattgccagtgaactgagagcctcggataagcccggacct
ttcgtaacgcatgccggcattcgccgcgacaaaagtgatgaggcaaaagagttcttaaac
cgctttctgccggagatggcagagacagatttttctaccatcgagggcttccgcgcactg
atcaatgcgctaaacgccgccacagatgaacgtccgctaagagcgatgattaacagactg
atggctcgagccagcttcagtgttaaagcggctccgcatatgggaatggcggttcccctc
tacacaaacggcacctcgcctctgcgaaaggcgctcgactactgcgtgcatcttcagctc
aaagcgatgcttggagatacgtccgtaacacccgctcaagcgacagtctttgatgcgatt
aaccaagccagcgcaaaaaatcgccaggcggtcaatacagctcaaaactggcttacgtgt
aacttcctgaacaagcttgcagcagggggagaaaatcagttcgacgcgtctgtcgttcac
atcaacacctccggcttcaccgtccggctcgacaaaaatggcttagaaggcgtcatcgat
ttgcgtagccacaacgataagttcagttttgataaatgggagatgtcgctcaaaagtaaa
aacgcacgttttgtgctggggcaacagattagggtcgagtaccagccgacagaaaagcct
cgtggcacgcaagcggctttttcgattttggcatcaagctcagtcactgcatcggactcc
ggtgccactgatgacacacaaaaaacctaa
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