Candidatus Paraluminiphilus aquimaris: E0F26_04720
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Entry
E0F26_04720 CDS
T09832
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Pathway
paqm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E0F26_04720 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paqm03021
]
E0F26_04720 (rpoB)
03400 DNA repair and recombination proteins [BR:
paqm03400
]
E0F26_04720 (rpoB)
Enzymes [BR:
paqm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E0F26_04720 (rpoB)
Transcription machinery [BR:
paqm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E0F26_04720 (rpoB)
DNA repair and recombination proteins [BR:
paqm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E0F26_04720 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
UZP74083
LinkDB
All DBs
Position
1010402..1014493
Genome browser
AA seq
1363 aa
AA seq
DB search
MTYSFTEKKRLRKDFGSMPKVMDIPYLLAIQLDSYRKFTQPDTPVDERGDYGLHAAFRSV
FPITSYSGSAALEYVDYSLGTPVFDVEECVLRGTTYACALRVKVRLIIYDKEASSKSIKD
IKEQDVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDQVFARIDRRRKLPATVLLRALGYESEEILEMFYETTTFQLNDEH
LATMTLVPKRLQGDMAAFDIMAGDKVLVDRGRRITARHIRQLEDAGVEALAVPDEYLVGR
RVAKPVIDTASGEVLLECNSELTEEILNSLREKEIESIETIYTNEIDCGPFISDTLAGDS
TRTELEALVEIYRMMRPGEPPTKESAENLFSNLFFSADRYDLSSVGRMKFNRRLGRDEVI
GSGTLDKEDIVSVLKCLVDIRNGKGVVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNEYGFLESPYRKVV
DGVVTDEIEYLSAINEANHVIAQASAALNDANQFVEELINVRHMNEFTVKTASEVDFMDV
SPKQVVSIAAALIPFLEHDDANRALMGSNMQRQAVPTLKTQAPLVGTGMERYVARDSGVC
KVATRGGVVDSVDASRIVVRVNPAEVGQDESPVDIYNLTKYKRSNQNTCVNQRPIVSPGD
SVQRGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVEEDRLTTIHIQE
LTCIARDTKLGAEEISADIPNVGEGALGKLDESGIVYIGAEVDAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSSYKGTVIDVQVFTRDGLEKDARAKQIEASQLAD
YRKDLKEELRIYEEATFARLAELLNGQKTVSGGGLSKGTAIDADVLAELDREQWFKLKFS
DAELNNQLASAQRLLEEQNQLLEERFEAKKEKLQSGDDLAPGVLKIVKVYLAVKRRIQPG
DKMAGRHGNKGVISVIMPVEDMPYDEHGEPIDIVLNPLGVPSRMNVGQILETHLGMASRG
LGVKINEMLEQQVKVAKLREFLKEIYAHTSDSRRDADIDSLSDDELLAMAQNLRPGVPMA
TPVFDGASEDSIKALLRLADLPDSGQLVLHDGRSGDEFDRPVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTVKSDDVAGRTK
MYKNIVDGDHSMDPGMPESFNVLVKEIRSLGIDIDLESESSGF
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgacttactcgtttacagagaagaagcgccttcgcaaagatttcggatcaatgccgaag
gtaatggatatcccctacctgctggccatccagctggactcttaccgtaagttcactcag
ccggacaccccggtggatgagcgcggcgactacggtctgcacgcagctttccgctcagtg
ttccctattacgagctacagcggtagcgcggcgctggagtatgtggattactctctgggc
acccctgttttcgacgttgaagaatgtgttttgcgtggcaccacctacgcatgtgcgctc
cgcgtcaaggtacgtcttatcatttacgataaggaagcgtcttcgaagtcgattaaagac
atcaaagagcaagacgtttacatgggcgaaattccgctcatgacagacaacggcacgttt
gtcattaatggcactgagcgcgtcattgtctcgcagctgcaccgctcgccaggtgttttc
ttcgatcacgatcgaggtaaaacccactcttcgggcaagttgctttacagcgcgcgaatc
attccttaccgcggctcatggctcgacttcgaattcgatcccaaagatcaggtcttcgca
cgtattgaccgccgtcggaaactgccagcgacggtacttttgcgtgcgcttggctacgag
tctgaagaaattctggagatgttctacgagacaacgactttccagttaaacgatgaacac
ctcgccaccatgacattggtgccaaaacgcttgcaaggcgatatggcggctttcgatatt
atggcgggcgacaaagtactggttgatcgcggtcgccgtattacggcccgacacatccgt
cagcttgaagacgcaggtgtggaagccttggcggtacccgatgagtacctcgtgggtcgt
cgtgttgccaagccggtcattgacactgcaagtggcgaagtgctgctagagtgcaatagc
gaattgactgaagagattttgaactcgcttcgtgagaaagaaatcgaatcaatcgaaacg
atctataccaacgagatcgattgcggtccgtttatttcagacacacttgcaggtgatagc
acgcgcacagaacttgaggcgctggtagagatctaccgcatgatgcgtcctggtgagcca
cccacaaaagagtcggcggagaacctgttctccaacctgttcttctctgcagaccgttat
gatctgtcgtcagttgggcgtatgaagttcaatcgccgtttgggtcgtgacgaagtaatt
ggtagtggaacgctcgataaagaagacatcgtttccgtacttaagtgcttggttgatatt
cgtaacggtaagggtgtcgtagacgatatcgatcacctcggaaaccgacgaattcgctcc
gttggcgagatggctgagaatcagttccgagtcggccttgtgcgtgttgagcgcgcggtt
aaagagcgcctgtccatggcggagagcgaagggttaatgccccaagatctcatcaatgcc
aagccagtctctgcggcggtcaaagaattctttggctccagtcagctgtcgcagtttatg
gaccagaacaacccactgtctgaggtgacgcataagcgtcgtgtctctgcgttgggtcca
ggtggccttacgcgtgagcgtgcgggctttgaggtgcgagacgtacacccaactcactac
ggtcgtgtctgtcctattgagacacccgaagggccaaacattggtctgatcaactcattg
gccgcttatgcgcggactaatgagtacgggttcctcgagtcgccctatcgcaaagtcgtt
gatggcgttgtgactgatgagatcgaatacctgtcagccattaacgaagcgaaccacgtc
attgcgcaggcctcagcggcgctgaacgacgcgaatcagttcgttgaagagctgatcaat
gttcgacacatgaatgaatttaccgtgaagacggcttccgaagtcgatttcatggatgtt
tcaccaaagcaggtggtttccattgccgctgcgctgattccgttccttgagcacgatgat
gcgaaccgcgcattgatgggctcaaacatgcaacggcaggcggtaccgacgcttaagacc
caagcaccgttagtgggcacgggtatggagcgttacgtggctcgcgattccggcgtttgt
aaagtggcaacacgcggcggtgtcgttgactctgttgacgcgagccgaatcgttgttcgt
gtcaatccggctgaggtgggacaggacgaatctccggtcgatatttataacttgaccaag
tacaagcgttctaaccagaacacctgtgtcaatcagcgccccattgtgagcccgggcgac
tcggttcaacggggcgacattcttgctgatggaccctcggtggacctcggtgagctggcg
ctcggtcaaaatatgcgaatcgccttcatgccatggaacggatacaactttgaggattct
attctcgtatccgagcgtgtggtcgaggaagatcgtctgaccacgatccacattcaagag
ctgacctgtattgctcgtgataccaagttgggtgctgaagaaatttcagctgacatcccg
aacgtgggtgaaggtgcgctcggtaagttggacgagtccggcattgtctacatcggtgcc
gaggtcgatgctggcgatattctagtgggtaaagtaacgcctaagggtgaaacgcaactt
actcctgaagagaagctcctgcgggctatctttggtgagaaagcatccgatgtgaaagat
acatcgttgcgcgtgccttcgagctataagggcacggttattgacgttcaagtctttacc
cgcgacggtcttgaaaaagacgcgcgtgcgaagcaaatcgaagcgtcgcaacttgccgac
taccgcaaagacctaaaggaagagcttcgtatttacgaagaggcaacatttgctcgtttg
gcagaactgctcaatggccaaaagacggtatccggcggcggtctgtcgaaaggcacagcc
attgatgccgacgtgcttgcagaactcgatcgcgagcaatggtttaagctcaagttctct
gacgctgagttgaataaccagcttgcctcagcgcagcggttactcgaagagcaaaaccag
ctactcgaagagcgttttgaagcgaagaaagaaaagctccagagtggtgatgacctcgct
cccggcgttctcaagatcgtgaaggtttatctcgcggttaagcgtcgtatccagccaggc
gacaagatggcgggtcgtcacggtaacaagggcgttatctcggtgatcatgccggttgag
gatatgccttacgacgagcacggtgagcctatcgatattgtattgaacccgctgggtgta
ccgtcgcgaatgaacgtgggccagatcttagaaacccaccttggcatggcttcacgcggt
ttgggcgtaaagatcaatgagatgctcgagcagcaggtcaaagtggccaagcttcgcgag
ttcttaaaggaaatctacgcgcacaccagtgacagccgacgcgatgctgatatcgatagc
ttgtctgacgatgagttgctggctatggcgcagaatctacgcccgggcgtacccatggcg
acaccggtcttcgatggcgctagtgaagacagcatcaaggcgctacttcgtctggcagat
ctgccggatagcggacagttagtgcttcacgatggccgcagtggcgatgagtttgatcgt
cctgtgaccgtgggttacatgtacatgctcaagctcaaccacttggtggatgacaagatg
cacgctcgatcaaccggctcttacagccttgtcacgcagcagccgctgggtggtaaagcg
cagtttggtggtcagcgatttggtgagatggaggtgtgggcacttgaggcttacggtgct
gcgcataccctgcaggaaatgctgactgttaagtcggatgacgtggcaggtcgaaccaag
atgtacaagaacatcgttgatggtgatcacagcatggatccgggaatgcccgaatcgttc
aatgtattggtcaaagaaatccgctcgctcggcatcgatatcgatctcgagtccgagtca
tcaggcttctga
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integrated database retrieval system
