Candidatus Paraluminiphilus aquimaris: E0F26_04725
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Entry
E0F26_04725 CDS
T09832
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Pathway
paqm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E0F26_04725 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paqm03021
]
E0F26_04725 (rpoC)
03400 DNA repair and recombination proteins [BR:
paqm03400
]
E0F26_04725 (rpoC)
Enzymes [BR:
paqm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E0F26_04725 (rpoC)
Transcription machinery [BR:
paqm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E0F26_04725 (rpoC)
DNA repair and recombination proteins [BR:
paqm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E0F26_04725 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UZP74084
LinkDB
All DBs
Position
1014507..1018796
Genome browser
AA seq
1429 aa
AA seq
DB search
MKDLLNLLNREKSEDFDAIRIGLASPEMIRSWSYGEVKKPETINYRTFKPERDGLFCAKI
FGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSLP
SRIGLLLDMTLRDIERILYFESYVVTDPGLSSLDHGQLLNDEQYFEAMEEFGDEFTAKMG
AEAIQELMIQLDLRSEIERLREEIPQTNSETKIKKLSKRLKLMEAFDKSGNRPEWMVLNA
LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQE
SVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVTGPTL
RLHQCGLPKKMALELFKPFIFGKLEHRGLASTIKAAKKMVEREPPEVWDILAEVIREHPV
LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR
ALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRERINAPGEGMVFADTKEVSRAYASGA
AHLQARVKVRIHEEVIEYGEAAQARTRVVETTVGRALLWNIVPEGLGYDMINRPMVKKAI
SQVINQCYRAVGLKQTCIFADQLMYTGYEYSTKSGSSIGVNDFEIPDAKTELIEKADAEV
VEIERQYSAGLVTQGEKYNKVIDIWSRTNEQVAKAMMSNLSSEIVINRDGEEEKQDSFNS
VYMYADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVAQDVVVVEEDCGTERGLLMTPVIDGGDIIESLADRVLG
RIIAADVVKPGSDEVLVPAGTLVDELWTLKIEEMGIDEILVRSPITCETRYGICSTCYGR
DLGRGHQVNMGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASGQAAQDNIQVNSDGTVRLH
NMKVVDRADGSLVAVSRSGELSVMDAVGRERERYKVPYGAVIKVGDESPVAAGDVVATWD
PHTHPIVTEVAGVVKMGGMEEGVTIKRQTDEFTGLSSISVMDPSERPSAGKDIRPAVTLV
DESGEELYLAGTNVPAHYFLPASAMVNLEDGVKVEVGDVIARIPQEGSKTRDITGGLPRV
ADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPTDGKTLPDGSDHYEELIPKWRQ
LSVFEGEQVEKGEVVSEGPLSPHDILRLKGIPELAKYIVNEIQEVYRLQGVKINDKHIEV
IVRQMLRKANVVSAGDSTFIKGEQIEWNAFLEECDRMDAEGLVRPSVDRELLGITKASLA
TESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVIVGRLIPAGTGLAHHEERRRQRAL
DSESGIQMSAEEFSESFAEELEKAGAADDLAQALAAELENAATTEGDAE
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttactaaacctgttgaaccgcgagaaatctgaagattttgatgcgatccgt
attggtcttgcctcacccgaaatgatccgatcgtggtcttacggcgaggttaagaagccc
gagactattaactaccgtacgttcaagcctgagcgcgatggtcttttctgcgccaagatt
tttggcccggtcaaggactacgagtgcctctgtggaaagtacaagcgactcaagcaccgc
ggtgttatctgcgagaagtgtggtgttgaagttgcgttggcaaaagttcgtcgagagcga
atgggtcacatcgaacttgcgagcccagttgctcacatctggttcttgaagtccctgcct
tcgcgcatcggcttgctccttgatatgacgcttcgtgatatcgagcgcattttgtacttt
gaatcgtacgtggtgaccgatcccggtctctctagccttgaccacggtcagcttttgaac
gacgaacagtacttcgaagccatggaagagtttggtgacgagttcactgcgaagatgggt
gccgaggcgatccaagagttgatgattcagctcgacctgcgcagtgagatcgagcgtttg
cgcgaggaaattcctcagaccaactctgagacaaagatcaagaaactttcaaagcgtttg
aagttgatggaagcgtttgacaagtcagggaaccgtcctgagtggatggtactcaacgcc
ttgcctgtcctaccgcccgatctgcgaccattggtgccgttggatggcggtcgctttgca
acatcagatctcaacgatttgtaccgacgtgttattaaccgtaacaaccggcttaagcgt
ctgcttgaccttaacgcgcccgatatcatcgtgcgcaacgagaagcgcatgctgcaagag
tctgtcgatgcactgttagataacggacgtcgtggtcgcgccattacaggctctaacaag
cgtccgctgaagtcgcttgccgacatgatcaaaggtaagcagggtcgattccgtcagaac
cttctcggtaagcgagttgattactctggacgatcggtgatcgtaacgggcccaactctg
agacttcatcagtgtggtttacccaagaagatggcgcttgagctctttaagcctttcatc
ttcggcaagttagagcaccgcggtcttgcaagtaccattaaagccgccaagaagatggtc
gagcgtgagccacccgaggtttgggatatcttggctgaggtgattcgtgagcaccctgtt
cttttgaaccgtgcgccaacgcttcaccgtcttggtattcaggcgtttgagccagtgctt
atcgaaggtaaggcgattcagctgcacccattggtttgtgctgcctacaacgccgacttc
gacggcgatcagatggcggttcacgtacctctgacgttggaagctcagctcgaagcgcgc
gctttgatgatgtcgacaaacaacattttgtcgcctgcatcgggtgatcccatcatcgta
ccttcgcaggacgttgtactgggcttgtactacatgactcgtgagcgcatcaacgcgccg
ggcgagggcatggtatttgccgatacaaaagaggtgtcgcgcgcttacgcaagtggtgct
gcgcatcttcaggcacgtgtcaaagttcgtattcacgaagaggttatcgaatacggcgag
gcagctcaggcgcgaacacgcgttgtcgaaacgacggtgggtcgagcgctcttatggaac
attgttcctgaaggcctgggctacgacatgatcaaccgtcctatggtcaagaaggcgatc
tcacaggtgataaaccagtgctatcgtgcggtgggtctgaagcagacctgtatcttcgct
gaccaactgatgtacaccggttacgagtactcgacaaaatcgggctcatcgattggtgtg
aacgatttcgagatccctgacgcgaagactgagctcatcgagaaagccgacgctgaggtg
gttgagatcgagcggcagtactctgcgggtctggtaacgcaaggcgaaaagtacaacaag
gtgatcgacatttggtcgcgtactaatgagcaggttgctaaggctatgatgtctaacctg
tcttcagaaatcgttatcaatcgcgacggtgaagaggaaaagcaagactcgttcaactcg
gtgtatatgtacgccgactcaggtgcacgaggctcgcccgcccagattcgtcagctcgcg
ggtatgcgtggtctgatggcaaagccagacggatcaattattgagacgcccattacggcg
aacttccgtgaaggtttgaacgtacttcagtacttcatttcgacacacggcgcgcgtaaa
ggccttgccgatacggcactgaagacagcgaactccggttatctgacccgtcgtctcgtg
gacgttgcgcaagacgtggttgtggtcgaagaagactgcggtaccgagcgtgggttgctg
atgacgcccgtcattgacggcggcgacatcatcgaatcgcttgctgatcgtgtattgggt
cgaatcatcgcggccgatgttgttaagcctggatcggacgaagtactggtccccgcagga
acattggtggatgagctctggacgttgaagatcgaagagatgggtatcgacgagatcttg
gtgcgctcacccattacctgtgaaacacgctacggcatttgctcgacctgttacggtcgt
gatctgggtcgtggtcaccaggtcaacatgggcgaggcaatcggtgtcgttgcggcgcag
tcgattggtgagccaggtacccagctgacgatgcgtaccttccacattggtggtgcggcg
tcaggccaagctgctcaggacaacattcaagtgaattcagacggtaccgttcgtcttcac
aacatgaaggtagtcgatcgtgccgatggctcgttggttgcggtttctcgatcaggcgaa
ctgtctgttatggatgccgttggtcgtgagcgagagcgctacaaggtgccttacggtgcc
gtgattaaggtcggtgacgagtcacctgttgcggctggcgatgtcgtcgcaacctgggac
cctcacacgcacccaatcgttactgaagtagcgggtgttgttaaaatgggtggcatggaa
gaaggtgtgaccattaagcgtcagaccgatgaattcacaggcctctcaagcatctcggtt
atggatccctctgagcgtccaagtgcgggtaaagacattcgacctgcagtaacgcttgtt
gatgagtcgggtgaggagctttacctggcgggtaccaatgtaccggcacactacttcctg
ccagcgtctgcgatggtaaacctcgaagacggtgtcaaagtagaagtgggcgacgtgatt
gcacgtattcctcaggaaggatcaaagacgcgtgacattaccggtggtttgccgcgtgtt
gctgacctctttgaggcgcgtaagccgaaagagccagcgattcttgctgaaatctcggga
accgttagctttggtaaagagacgaaaggtaagcgtcgtttggtgattacgccaaccgat
ggcaagacattgcctgacggctctgatcactacgaagagcttattccgaagtggcgtcag
ctttcggtgttcgaaggtgaacaggtagagaagggtgaagtcgtctctgaaggtccgctt
agcccgcacgatatcctgcggttgaagggtattcccgagcttgcgaagtacatcgttaac
gaaatccaagaggtctatcgcctccagggtgtgaagattaacgataagcacattgaagtc
attgtgcgtcagatgctccgtaaggcgaatgtcgtttctgccggtgactctacctttatc
aagggcgagcagatcgagtggaatgcgttccttgaagagtgcgaccgaatggatgctgaa
gggttggttcgaccgtctgttgaccgagaacttctgggcatcacaaaggcgtcactggcg
actgagagcttcatctccgccgcttcgttccaggaaacaacgcgtgttcttaccgaggct
gcggtgactggaaagcgtgattacctccgcggtttgaaggagaacgtcatcgttggtcgt
ctgattccggctggtacgggtcttgcgcaccacgaggagcgtcgacgtcagcgtgccctg
gatagcgagtcaggtattcagatgtcggctgaggagttctcagagagcttcgctgaggaa
ctcgaaaaagcgggggccgccgatgatttggcacaggcactcgccgctgagctagagaat
gcagcaaccaccgagggtgatgctgagtaa
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