Candidatus Paraluminiphilus aquimaris: E0F26_08740
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Entry
E0F26_08740 CDS
T09832
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Pathway
paqm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E0F26_08740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqm03019
]
E0F26_08740
03009 Ribosome biogenesis [BR:
paqm03009
]
E0F26_08740
Enzymes [BR:
paqm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E0F26_08740
Messenger RNA biogenesis [BR:
paqm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E0F26_08740
Ribosome biogenesis [BR:
paqm03009
]
Prokaryotic type
rRNA helicases
E0F26_08740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
Motif
Other DBs
NCBI-ProteinID:
UZP74817
UniProt:
A0ABY6Q6B9
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All DBs
Position
complement(1916300..1918039)
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AA seq
579 aa
AA seq
DB search
MTESAPSPTAFSSLGLPTFLLNSLKELGYEAATPIQAETIPAMLSGQDVVGIAQTGTGKT
AAFALPSLASLDFDTATPQILVLCPTRELSMQVADAFRSYAKRSKGCKVVALCGGNDMRQ
QLRQLKDGVHVIVATPGRLLDHLNRRTADFSRIKTVVLDEADEMLRMGFIDDVDKILSQT
PTGRRVALFSATMPQRIREIASEHLQAPVEVSITSQATTNTNIEQCYWLVKGTNKLDALG
RFLSVEDTQGVIVFVRTRESTSAIADQLRQRGFSASPLNGDIDQKTRIKTVEQLKDGRLD
VIVATDVAARGLDVERITHVINYDIPFDRESYVHRIGRTGRAGRAGKAILFVAPRERRML
QNIERVTRQKIQSIELPSFADIDAKARERLIDQLRTAMTNPVHPRAGEAIEQLINEGHTH
QDIAMALAGLVIDGAEPAKESRRPKKVSDDQDNRPSRGNSREPSPIKDKHGKERVVPLTY
TVKELGRARPLDEHPDVLMERFWLAVGNKQGVKAREIVGAIANEAGIEGQFIGSINIFEH
YATIDLPEGMPKPILKHLKKIRVKGTNLGIVRVVDSHSA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatctgcgccttcccccacggcttttagtagccttgggctaccgactttttta
ctcaattcactcaaagaattgggatacgaagccgctacccctattcaagctgagacgatt
ccagcgatgctgagcggacaagatgtcgtgggtattgcacaaacggggacgggcaaaaca
gctgccttcgcgcttccctctttggcaagcttggactttgatacagcgacaccgcaaata
ttagtgctatgccctactcgcgagctgtcaatgcaagtcgctgatgccttcaggagctac
gcaaaacggtctaagggctgcaaggtcgtcgcactttgcgggggcaacgatatgcgccag
caattgcgccaacttaaagacggggttcatgtcatcgttgcaacaccgggaaggcttctc
gatcacctcaatcgcagaacggctgatttcagcaggatcaagactgtcgtgctcgatgaa
gccgatgagatgctcaggatgggtttcatcgacgatgtcgataaaattctttctcagacg
ccgactggtcgacgcgttgctcttttctcagccaccatgccgcagcggattcgcgagatc
gcaagcgagcacctgcaggccccagtcgaggtttctattacctctcaggcaacgaccaat
accaatattgagcaatgctactggcttgtaaaaggcaccaacaaactcgatgccctcgga
cgttttctcagtgtggaagacacacaaggcgtcattgttttcgtgcgtacacgagaatca
acgtccgctatcgccgatcagttaaggcagcgtggcttcagtgcctcaccactgaacggt
gatatcgatcaaaaaacccgaatcaaaaccgtagaacagctgaaagatggtcgactcgat
gtcatcgtggcgaccgatgtcgcggcacgtggattggacgttgagcgaataacgcacgtt
atcaactacgatatccctttcgacagagaatcgtatgtgcaccgaatcggccgaacaggc
cgcgcgggtcgcgccggaaaagccatcttgtttgtcgcaccaagagagcgtcgtatgctc
caaaatattgagcgcgttacaaggcaaaaaatccagtccatcgagcttccaagctttgct
gatatcgatgcgaaagcgcgcgagcgattgatcgaccagttgcgtacagccatgacgaac
cccgtccatccgcgtgctggcgaggcaatcgagcaactcattaatgaaggccatactcat
caggatatcgccatggccctcgctggccttgtgatcgacggagccgaacccgcgaaggaa
tcaagacgcccgaagaaggtcagcgatgaccaagacaatcggccgtctcgtggtaattca
agagagccaagcccgatcaaggacaagcacggtaaagagcgtgttgttccacttacctat
acggtaaaggaactcggaagagcgcgaccgctagacgagcaccccgatgtacttatggag
cggttttggttagccgtgggtaacaaacaaggcgtgaaagcgcgcgaaattgttggtgcc
attgcaaacgaggcgggaatcgaaggacagtttatcggcagcattaatattttcgaacac
tacgcaacaatcgacttgcccgaggggatgcccaagcccatcctaaaacaccttaagaaa
attcgggtgaagggtacaaacctcggtatcgtgcgagttgtggactcccactccgcctga
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