Candidatus Paraluminiphilus aquimaris: E0F26_09130
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Entry
E0F26_09130 CDS
T09832
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Pathway
paqm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E0F26_09130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqm03019
]
E0F26_09130
03009 Ribosome biogenesis [BR:
paqm03009
]
E0F26_09130
Enzymes [BR:
paqm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E0F26_09130
Messenger RNA biogenesis [BR:
paqm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E0F26_09130
Ribosome biogenesis [BR:
paqm03009
]
Prokaryotic type
rRNA processing factors
E0F26_09130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UZP74889
UniProt:
A0ABY6Q752
LinkDB
All DBs
Position
1996415..1999162
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AA seq
915 aa
AA seq
DB search
MKKMLINATEREEVRVALVDGQRLYDLDIENRARLQTKANVYKAKVTRVEPSLEAAFVDF
GAERHGFLPLKEIAHQYYRSSSPSDGKMRIKDAIKEGTEVIVQVDKEERGTKGAALTTYI
SLPGRYMVLMPNNPKAGGISRRIEGDDRTELRDALNQLEIPNGMGVIIRTAGVGRSAEEL
QWDLDYLLKLWAAISEAADENPPQTLLYQESDVIIRAIRDYLKDDIDQVLIDDAHAHRQA
LDFVSMVMPKYQNRIKAYDDSLPLFNRFQVEGQIETAFQREVRLPSGGSIVIDPTEALVS
IDINSARATKGSDIEQTALQTNLEAAEEIARQLRLRDMGGLVVIDFIDMNASKNQRAVEN
RMRDSLEIDRARVQLGRISRFGLLEMSRQRLRPSLGETSGMVCPRCNGQGTIRDTKSLAL
AILRLIQEEASKERTGEVRVIVPVDVSAFLLNEKRSAVGEIEQATKVRVLIIPNPNMQTP
HFEVIRLRDDEVEEEQRESFEIDLTAFEAEAAVSDEDKGAPAPQALVRGVTPDAPPPAAS
PAPETEAKNSEPASAPETAPVKPGLFPRLWAALFAPIPKDEEPEEKSGGEGKKTGERAGN
KPKRRNNRQRKRPAKQAVADAAATETVVVAETPSVAEKTSDDSSEGEPKKRRRRGRRGGR
RRGAGEVAAEGSAATGSEGTEALTDDVDNLVGNETDNADAVASNDSDGHSEAEPRHRPSD
KRSEGRRRRRRGPRTDNSSTESAATTDGTSPEVISASTLSSVAEVEESGASGESGDLFAN
VTSAAVAKEDDLAANVQSSEPVKPEEAKPVAPHTDKRLSDGSTSEAAASDAPATVLDRSG
VTETGRAINDPRVEANPVTEVVVESGMRALFNVAASPDAVKIANNPARAANDPRGPRESD
EPMDSSSGENNAQEA
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagatgttaataaacgccaccgagcgcgaagaagttcgcgttgcgctcgtcgat
ggccagcgactctacgatttagatatcgagaatcgcgccagactccaaaccaaggccaac
gtatacaaagcgaaagtaacgcgcgtcgagcccagcctcgaggcggcatttgtagacttt
ggcgctgagcgccacggttttttgccactcaaagaaattgctcatcagtactaccgatcc
tcgtcaccctctgacggtaagatgcgcattaaagatgccatcaaagaaggtaccgaagtc
atcgttcaagttgacaaggaagagcgcggtactaagggtgcagcgttaaccacctatatc
agcctccccggccgttacatggttttgatgcccaacaatcctaaagcgggtggtatctca
cgtcgcatcgaaggtgacgatcgaacagagcttcgtgacgcactaaaccaactcgaaata
cccaacgggatgggtgtcatcattcgaaccgcaggtgttggtcgctctgcagaggagctc
cagtgggacctggactaccttttaaaattatgggcagccatctctgaggctgcagatgag
aacccccctcagacgctcttgtaccaggagagcgacgtcattatccgcgctatacgtgat
taccttaaagacgatatcgatcaagttttgattgatgacgcgcacgctcaccgtcaggcg
cttgattttgtaagcatggtgatgccgaaatatcaaaatcgcatcaaggcttacgatgat
tcgttgcccctctttaaccgcttccaagtggaaggtcagattgagactgcattccaaaga
gaagtaagactcccgtcaggtggatcgattgtgattgatccgaccgaggcgcttgtctct
atcgatatcaactctgcccgcgcgacaaaaggcagcgatattgagcaaacagcactgcag
accaatttagaagcagcagaagagatcgctcgacagctacggcttcgggatatgggcggc
cttgtcgtaatcgatttcatcgatatgaatgcgtctaagaatcaacgtgctgtcgagaat
cggatgcgtgattcgcttgaaattgatcgagcgcgcgtacagctgggtcggatatctcga
tttggattgctcgaaatgtcgcgacagcgccttcgtccctcattgggtgagacaagcggc
atggtatgtcctcgctgtaacggtcagggcactatccgagacaccaaatcactcgctctc
gccattctccgcctgattcaagaagaggcgtcgaaagagcgaacaggtgaagtaagagta
attgttccagtcgatgtctctgcgtttttgctaaacgaaaagcgttcggcggttggagaa
attgagcaggcaaccaaggttcgtgtcctcattattcctaatcccaatatgcagaccccc
cacttcgaagtcattcgcttaagagacgatgaagtcgaggaggagcaacgcgagagcttt
gagattgaccttacggccttcgaggcggaagcggcggtcagtgacgaggataaaggagca
ccggcgccacaggcgcttgtgcgaggtgtgacgcccgatgcaccccctcctgcagcatca
cctgcaccagagaccgaagcgaagaattcagagccagcgtccgcacccgaaacggcaccc
gtcaagcctgggttatttcctcggttgtgggctgctttatttgcgccgatacccaaagac
gaagaaccggaagaaaagtccggcggtgagggcaagaagaccggcgagcgcgcaggaaac
aagcccaagcgacgaaataatcgtcagcgcaaacgccctgctaagcaagcagtggctgat
gccgcggcgacagaaaccgtcgtcgttgcggaaacaccgtcggtagcggagaaaaccagc
gacgacagtagcgaaggtgagcccaagaagcgtcgcagacgcggtcgacggggcggtcgt
cggcgcggtgctggcgaagttgcggcagagggttcggccgcgactggatcggagggaact
gaagcgttaaccgacgacgtcgacaacctggtgggcaatgaaacagataacgccgacgca
gtggcttccaatgactccgacggtcatagcgaagcagagccaagacaccgaccttcagat
aaacgttctgaaggccgtcgtcgtcgcaggcgtggcccaagaacagacaattcgtcaaca
gagtcagcagcgacaacagacggcacctcccctgaggtcatctctgcgtctacactgtct
tcggttgccgaggtagaagaatcaggtgcgtcgggtgagtcaggtgatctgtttgccaac
gtcacctctgcagcagttgcgaaagaagatgatctggcggcaaatgttcagtcaagcgag
ccggtaaagcctgaagaggctaaacctgttgcgcctcatactgacaagcgtttgagcgat
ggttcaacatctgaagcggcggcctcagacgcaccagcaacggttctcgaccgaagcggt
gtaactgagactggcagagcgatcaatgacccacgcgttgaagcaaatcccgttactgaa
gtcgttgttgaatcaggaatgcgcgccttgtttaacgttgccgcctcccctgatgcggtc
aaaatcgcgaacaacccggcgcgcgcggctaacgatccacgaggtccgagggagagcgac
gaaccaatggattcatcttcgggagaaaataacgctcaggaagcttga
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