Candidatus Paraluminiphilus aquimaris: E0F26_10415
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Entry
E0F26_10415 CDS
T09832
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Pathway
paqm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E0F26_10415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqm03019
]
E0F26_10415
Enzymes [BR:
paqm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E0F26_10415
Messenger RNA biogenesis [BR:
paqm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E0F26_10415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
UTP25_NTPase-like
AAA_19
HI1480
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UZP75126
UniProt:
A0ABY6Q894
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All DBs
Position
2272081..2273388
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AA seq
435 aa
AA seq
DB search
MYFKDLDLSSELLRAIEKKGYSEATPIQQKAIPLVLQGKDLLAGAQTGTGKTAGFTLPLL
QQLQRKYPNTKHKSYPKVLILTPTRELAAQVHESVRDYSSYLNFRSAVVFGGVSINPQKQ
KLIRGVDIIIATPGRLLDHVQQRSVDLSRIETLVLDEADRMLQMGFIHDIRRVVKIIPKQ
RQTLLFSATFSSEIKRLAADFLNDPSEIQVTPENTTTERVSQVVYPVDKRRKRELLSQQI
GENNWQQVLVFTRTKHGANRLATQLETDGISAAAIHGNKSQGARTKALADFKSGAVRVLV
ATDIAARGIDIHKLPHVVNYELPNSAEDYVHRIGRTARAGQTGGAISLVCVDELKLLSDI
EKLIGTKIEQVKLPGYDVDPTIKPEPIQNGRTGRSNGRQANDRQPGGKRSSAQGRGAKSA
GQKQGRSRNGRGRAA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
gtgtattttaaagacctcgacctgtcgtcggaactgctgcgtgctattgaaaaaaaaggc
tacagcgaagccaccccaatccagcaaaaagccatcccgctggtattacaaggcaaagat
ttacttgccggtgctcaaacaggcactggcaagaccgcaggtttcacactaccgctgctg
caacaacttcagagaaagtacccaaataccaaacacaagagttaccccaaagtactcata
ctaacgccgacgcgcgaactcgctgcacaggtgcacgagagtgttcgggactacagcagt
tacctcaactttcgttcggcggtcgtttttggtggggtgagtattaatccgcaaaagcaa
aaacttattcgaggcgtcgacataatcattgcaacacccgggcggctgctcgatcacgtt
cagcaacgcagcgtagatctatcaagaattgaaacgctcgtactcgatgaagccgatcgc
atgcttcaaatggggtttattcatgatattcgtcgggtggtaaaaatcatacccaagcaa
cgccaaacgctgcttttctccgccacgttctcttccgagataaaacgccttgccgctgat
ttcctgaacgatccaagcgagattcaagtcacaccggagaacacgactaccgagcgtgtc
agtcaagtggtgtatcccgtcgataagcgtcgtaagcgcgagttgctgtcacaacaaata
ggcgagaataattggcaacaagtattggtttttacgcggaccaagcacggcgctaatcga
ttggcgacgcaactcgaaaccgacggtatttcggccgcggcaattcacggaaataaatct
cagggggctcgcactaaagctctggccgatttcaagtccggtgcggtccgcgtgctggtg
gccactgatatcgcagcccgcggtattgatattcataagcttccccatgttgtgaactac
gaactgcccaattcggctgaagattatgtgcatcgcatcggtcgtacagcacgtgcagga
cagacaggcggtgccatctcacttgtctgtgtcgacgagctaaagctgttgagcgacatt
gaaaagctcatcggcaccaaaattgagcaagtgaaattaccgggttacgacgtggacccc
accattaaaccagaacccattcaaaacggtcgtacaggccgaagcaacggccgccaagcc
aatgatcggcaacccgggggcaagcgctctagtgctcagggtcgcggcgctaagtcggct
ggtcaaaagcagggtcgatctcgcaacggtcgtgggcgcgcagcataa
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