Candidatus Paraluminiphilus aquimaris: E0F26_10865
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Entry
E0F26_10865 CDS
T09832
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqm03019
]
E0F26_10865 (hrpA)
Enzymes [BR:
paqm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E0F26_10865 (hrpA)
Messenger RNA biogenesis [BR:
paqm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E0F26_10865 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND_NTPase5
AAA_30
NACHT
nSTAND3
SLFN-g3_helicase
T2SSE
ResIII
AAA_23
ABC_tran
AAA_25
PhoH
AAA_16
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
UZP75204
UniProt:
A0ABY6Q802
LinkDB
All DBs
Position
complement(2367858..2371604)
Genome browser
AA seq
1248 aa
AA seq
DB search
MSKDRESRFERIVPQHLSYPEQLPVVARKDEIMRAIAENQVVVVAGETGSGKTTQLPKIC
LELGRGRDKRIGHTQPRRIAARAVSSRIAEELGAEVGGLVGYQVRFNDQVSEQTAVKVMT
DGILLTELTRDRQLNAYDTLIIDEAHERSLNIDFILGYLKRLLPKRPDLKVIITSATIDV
ERFSKHFNDAPIIEVSGRTYPVDVHYLDAVEDRDRGVQRQVAELVDEIEAQKYGPRGDVL
IFCPGERQIRDLAKTLRGRDRIQVLPLYARLSNAEQNRVFSRSGSGMRVVLATNVAETSL
TVPGIRYVIDPGDARVSRYSHRSGLQRLPIEPISQASANQRKGRCGRVAEGVCFRLYSEQ
DFLSRPEFTDAEILRTNLASVILRMLELGLGDVRQFPFVDPPETKMVRDGFRLLTELGAV
GTDAKLTQLGRAMAKLPVDPKLSRILLDAASRDCLHEALVIVSALSVQDPRERPQEKRAQ
ADQQHARFNNAKSDFVAWVNLWQYVEEQRQALSQNQLRKLCEREFLSYLRIREWREVHHQ
LVLSCRQMKFSVTAGKADDDRYEPIHRALLTGLLGNIAQQDEGRKFNAARNRKAQVFPAS
GQYKKPPKWLVAAELVETSQVFARQCAAIEPAWLLDTNPDLLKRHHYEPAWSARSGRVMA
KERVSLFGLTISDGQRVHYAGIDQKTSRQIMIRDGLVSGNVRKPPEFLKHNLKLVADVME
LESRTRRRDLLVDEESMVRFYDERLPADCASGVALDKWLRRDESASTSLKMNREQVLTRD
PGGEVEDQFPKTLRVGEVCFDLSYQFEPGGNRDGVTVTIPRALMNRAPRYRFEWLVPGLL
REKLIAMIKGLPKTLRKQLVPAPDVADALLDRLTLSNEPLAQALSRELKSLRGVSVSLDD
WSQVVIEPYYQMNIRVVDDRKKLLAEGRDLSSLIAQFRSDSPVEVVTTKNNLERVNVTRW
DFQALPEEWRGKSAGAEVMAYPAVIKEGSGQLSVRLLDYASEAARQHRLGVAGLLLQGDL
KTAKYLKKQLFTDNAAKLALAGAQLERDPLVDALIEGGLWQLLEDIALPRSPDTFSQVQH
QVTANWVPHVLEMGNHLTLAVKTAAGVRSVLTKYQPKEFSASRVDMEQQIAGLFDAKALL
ETPAEWLSYYPRYLKAVLNRAERLSAQGGKDEKSMSLLQPQLDRLSKGQRDYPGLEVLSR
EAVRFRWMLEEFRVSLFAQQLGTKLPVSAKRLDQQWQSVEQWMTNNPR
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaagaccgtgaaagtcgttttgagcggattgttcctcagcacctttcgtacccc
gagcagctacctgttgttgctcgaaaagacgaaatcatgcgggctatcgctgaaaatcaa
gttgttgtcgtcgcgggcgaaacaggttctggtaagacaacgcagctcccgaaaatatgc
cttgagttaggtcgaggccgagataaacgcattggccacacacagccacgacgtattgcc
gcgcgcgccgtatcaagtcgaattgccgaggagcttggcgccgaagtaggcggactggtt
ggttaccaagtacggtttaacgaccaggtgtctgagcaaacagcggtcaaggtaatgact
gacggtattttactgaccgagctcacgcgagaccgtcagctaaatgcctacgacacattg
atcattgatgaggctcacgagcgcagtctcaacatcgacttcattttgggttatttaaag
cgattattgcccaagcggcctgatctgaaggtcattatcacgtcggccaccatcgatgtt
gagcgtttcagcaagcactttaacgatgcaccgattatcgaggtgtccggtcgcacttac
cctgttgatgtccattacttggatgcggttgaagaccgggatcgtggcgtgcaacgtcag
gtggcagagctcgttgacgaaattgaggcgcaaaagtatggccctcgcggcgatgtgctc
attttttgtccgggcgagcgtcaaatacgcgacctagcgaaaaccctgcgagggcgagat
cgcattcaggttcttccgctctacgcccgcttaagtaacgcggagcaaaaccgtgttttc
agtcggtcgggatcgggcatgcgagtggttctcgcaaccaatgtggctgagacatcactg
acggttccgggaatacgatacgttattgatccaggcgatgcgcgcgtaagtcgttacagc
catcgatcgggacttcagcgtttgccaattgaacccatctctcaagccagtgctaaccag
cgaaaagggcgttgtggtcgcgtcgcagagggtgtttgttttcggctttactcagagcaa
gactttttatctcgacccgagtttaccgatgcggaaattctccgcaccaacctcgcctct
gttattttgcgcatgctggagctcggtctgggcgatgttcgccagttcccatttgtcgat
ccacccgagactaaaatggttcgcgacggttttagactgctcactgaattgggggcggtt
ggtaccgatgccaagcttacgcaattgggcagagccatggcgaagttgcccgtcgaccca
aagttgagtcggatcctgctcgatgcggcgagtcgagactgcctccatgaagcactcgtt
atcgtcagtgctctgtccgtccaagatccgcgtgagagacctcaggaaaaacgagcacaa
gcagatcagcagcacgcacgatttaataatgccaaatcggacttcgtagcatgggttaac
ttatggcaatacgtggaagagcagcgccaagcactgagtcaaaatcagctgcgtaaactg
tgtgaacgcgaatttttgtcgtatctgcgcattcgcgagtggcgcgaggtccaccaccag
ttagtgctgtcttgccgacaaatgaagttttctgtcacagcggggaaagccgacgacgac
aggtatgagccgattcatagagcgttactcacgggtctactgggcaatattgcgcagcaa
gacgaaggacggaagttcaacgcggctcgtaaccgaaaggcacaggtatttcctgcctcg
ggtcagtacaagaagccccctaagtggctggttgccgcagagctggtggaaacctcacag
gtatttgctcgacagtgcgcggcgattgaaccggcttggttgttagacaccaatcctgat
ctgctaaagcgacatcactatgaacccgcatggagcgcgcgttcgggtcgcgtgatggcc
aaggagcgggtctcactgtttggcctgactatcagtgacggacagcgcgtccactatgcg
ggtattgatcaaaagacatcacgtcagattatgattcgtgatggcttggtatccggtaac
gttcgaaagcctcccgagtttttgaagcacaacctgaaactcgttgctgatgttatggag
ttggagtcacgcacacgtcgtcgagacttattggtcgacgaggagtctatggtgcggttt
tatgatgaacgtcttccggcggattgcgcaagcggtgtcgcactcgacaaatggctacgc
agggacgagagcgcctcgaccagcttgaagatgaatcgtgagcaggtgctaacgcgtgat
ccgggtggtgaggtcgaggatcaattccctaagaccttgcgggttggagaggtctgtttc
gacctcagttaccagtttgaaccagggggtaaccgtgatggcgtaacggtgacgataccc
agggcactgatgaatcgtgcgccgcgctatcgcttcgagtggcttgttccaggtctcctt
cgagagaagctgatcgccatgatcaagggtttgcctaaaactttacgtaaacagctcgtt
cccgcacccgatgttgcggatgccctacttgatcgattgaccttaagtaatgagcctttg
gcacaggcgttgtcgcgcgagctaaaaagtttgagaggcgtttcggtatcgcttgatgac
tggtcacaggtggtcatcgaaccctactaccaaatgaatatccgtgttgttgatgatcgc
aagaaattactggctgagggcagagacctttcgagccttatcgctcagtttcgaagtgac
tctcccgtagaggttgtgacaacgaagaataatctagagcgtgtcaacgtgacgcgctgg
gattttcaagcgcttcctgaggagtggcggggtaagtcggcgggggccgaggtcatggcc
tatcctgcggtgataaaggagggctcgggacagttgtccgtaaggcttttggattacgca
tccgaggcggcgcgtcagcacaggcttggtgtggcaggtcttttacttcaaggggatttg
aaaacagccaaataccttaaaaagcagctctttactgacaatgcagcgaagcttgcgctc
gcgggggctcaattagagcgagacccactggttgatgcgttgattgaaggtggactttgg
caattgctcgaggacatcgcactgcctcgatcgccagatacgtttagtcaggtgcagcat
caggtgacagcgaactgggtaccccacgttttggaaatgggtaatcacctgacactcgcc
gtgaagacggcagctggggtgcggtctgttctgacgaaataccaacctaaagaattttct
gcatcccgcgtggatatggaacagcaaatagctggactgtttgacgcaaaagccttgcta
gagaccccagccgagtggctgtcttactatccgcggtatttaaaagcggttctcaatcgt
gctgagcgactgtcagcacagggggggaaagacgagaaatctatgtctttgcttcagcct
cagctcgatcggctttctaaaggccaaagagattatccgggactggaagtattgtctcgc
gaggctgttcgatttaggtggatgctggaagagtttcgtgtgtcgctctttgcgcagcag
ctgggtacaaaattgcccgtatcggcgaagcgactggatcagcagtggcaatccgttgag
caatggatgacgaataacccacgttaa
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