Candidatus Paraluminiphilus aquimaris: E0F26_11325
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Entry
E0F26_11325 CDS
T09832
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Pathway
paqm03410
Base excision repair
paqm03430
Mismatch repair
paqm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E0F26_11325 (recJ)
03430 Mismatch repair
E0F26_11325 (recJ)
03440 Homologous recombination
E0F26_11325 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paqm03400
]
E0F26_11325 (recJ)
DNA repair and recombination proteins [BR:
paqm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
E0F26_11325 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
E0F26_11325 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E0F26_11325 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ETF
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
UZP75288
LinkDB
All DBs
Position
complement(2482003..2483736)
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AA seq
577 aa
AA seq
DB search
MTTAIKHREGLVSPELAAANIPDAIKKIYAHRGVQRLDEISLPLNQLLSPAALLGAQEAA
EMLADAIEFQASVVIVGDFDADGATSCALAVSLLKQMGLEEVYYLVPNRFEYGYGLTPEI
VGIAAQYQPDVLVTVDNGIASIDGVSAARQLGMSVIITDHHLPGEVLPEADIIVNPNQPG
CRFPSKALAGVGVMFYVLTALRAELRSRGWFESMNIEIPNLADSLDLVALGTVADVVPLD
KNNRTLVAAGIARMRAGRARPGIEALFEVAGRDIRSVTSTDLGFVAGPRINAAGRLDDMS
VGIECLLAESTVAARSFAAQLNDYNKERRNIEGTMQAEALALVESGEFAVRDQDFAVTLY
RDDWHQGVVGILASRIKERFHRPTIIFAEAGDEELKGSGRSIPGVHLRDVLDRVATQNPG
LVTKFGGHAMAAGLSLAKVKLAEFREAFNQAVADELHGVTPNQEYLTDGSLSHAELSPSL
AEALASGGPWGQGFEPPSFDGTFAIDDMRVVGEKHLKFRLATDAGVIDAIAFNADVDTWL
QERPAAMTCVYKPSINDFRGERRLQLQLDVIWPLITT
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggccattaaacatcgcgagggtttagtctcgcccgagctcgccgcggccaat
attccggatgcgatcaaaaagatctacgcgcaccgcggtgttcaacgtcttgatgagatc
tcgctaccgttgaatcagttgctgtctccagcggcacttttaggcgcgcaggaggccgct
gaaatgcttgctgatgccattgagtttcaggcgagcgtcgtcattgtcggcgacttcgat
gccgatggcgcgacaagttgtgcgctagcggtttctcttctcaaacaaatggggctggaa
gaggtctattaccttgtacccaatcgcttcgaatacgggtatggactcacacctgaaatc
gtaggcattgcggcgcagtatcagcctgatgtcttggtgactgtcgacaatggtattgcc
agtatcgacggtgtttcggctgcgcgtcagctgggtatgagtgtcatcataacggaccac
catctgcccggtgaggtattgcctgaggccgatatcatcgtaaaccccaatcagccgggt
tgccgcttcccaagtaaggcgttagcgggcgtgggtgtcatgttttacgtgcttactgcc
ttgcgcgctgagctgcggagtcggggttggtttgagtcgatgaacatcgagatccccaac
ctggctgattccttggacttggtcgcacttggaactgtcgcagacgtcgttccacttgat
aagaacaatcgaacacttgtcgcggcaggtattgcacggatgcgtgcgggcagggctcga
ccgggtatagaagcgttgtttgaagtggcgggcagagatattcggtctgtcacatcaact
gacctaggtttcgttgctgggcctcgtatcaacgccgcggggagattagatgacatgtcc
gtaggcattgaatgtttactcgccgaatcgacagtggctgctcggtccttcgcggcgcaa
cttaacgactacaacaaggagcggcgcaatatcgaaggcacgatgcaagctgaggccctg
gcgctggttgagtcgggtgagtttgcagtccgagaccaagacttcgcggtcacgctttat
cgcgatgattggcatcagggcgtggttgggatcctcgcctcccggatcaaagaacgcttt
catcgtcctacaattatttttgccgaagcgggtgacgaggagcttaagggctctggccgc
tcgattcccggcgttcacctgcgggatgttttagatcgcgtggcaacccaaaatccgggc
cttgtgacgaagtttggtgggcacgccatggcggcaggactcagtttagccaaggttaaa
ttggcagaatttcgagaagcgtttaatcaggcagtggccgacgagctgcatggcgtgacg
cccaatcaggaatacctgaccgatggctccttgagccacgcagagctctcaccgagcctt
gctgaggccctagcgtcgggcggaccatgggggcagggctttgagccgccttcatttgac
ggaacgtttgccattgacgatatgcgtgtcgtaggggagaaacatctgaaatttcgtctg
gcaacagatgcaggggttatcgatgccattgcattcaacgccgatgtggatacctggctt
caagaacgcccagccgctatgacctgcgtctataagccttcgataaatgactttcggggt
gaacgccgacttcaactccaactcgatgttatctggcccttgataacaacctga
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