Candidatus Paraluminiphilus aquimaris: E0F26_11605
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Entry
E0F26_11605 CDS
T09832
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Pathway
paqm03030
DNA replication
paqm03430
Mismatch repair
paqm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E0F26_11605
03430 Mismatch repair
E0F26_11605
03440 Homologous recombination
E0F26_11605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paqm03032
]
E0F26_11605
03400 DNA repair and recombination proteins [BR:
paqm03400
]
E0F26_11605
Enzymes [BR:
paqm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E0F26_11605
DNA replication proteins [BR:
paqm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E0F26_11605
DNA repair and recombination proteins [BR:
paqm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E0F26_11605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
RMI2
Motif
Other DBs
NCBI-ProteinID:
UZP75341
UniProt:
A0ABY6Q9J0
LinkDB
All DBs
Position
complement(2538462..2541902)
Genome browser
AA seq
1146 aa
AA seq
DB search
MDPKFVHLRVHSEFSLTDGLVRVGPLMKSVAAADMPSVAVTDRTNFFGLIKAYKAAEREG
VKLIIGADFEVLEDDERRYQATFLAQSAEGYRNLTLLISQAYQEGQILGRPLLRRDWIQA
RSQGLIALSGGRLGDVGQHLVAGRRQEAKAALEWWMSLFPDRYYVELQRTGRENEEDYLH
AAVALAAEENCPVVATNEVCFLTPEEYDAHEARVCIGDGRTLNDPRRPRHFSDQQYLRSP
DEMIALFADIPEAIENTIHIAARCSTEIELGKAYLPDFPTPEGVSIEQHLEDLSNEGLDK
RLAALNIDDDEVYRARLKFELDIINQMGFPGYFLVVMDFIRWGKANGIPVGPGRGSGAGS
LVAYALEITDLDPIEYDLLFERFLNPQRVSMPDFDVDFCMDRRDEVIDYVAETYGRNAVS
QIITFGTMAAKAVVRDVARVQDKPYALADKMSKLIPFEVGMTLEKALEQEEQLVNLLEED
GAAQEIWDMAVQLEGLTRNAGKHAGGVVIAPSQLTDFSPLFCDEEGHGLVTQYDKNDVED
AGLVKFDFLGLRTLTIIDWAVAMINEREDIASPVDINQIPLDDGAVYSLLQSAETTAVFQ
LESRGMKELIKSLRPDCFEDIIALVALFRPGPLQSGMVENFIDRKHGREQVSYPDAQYQH
EWLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAKQRSVFEGG
AKDKGVDPTLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKRHYPSEFMAAVMSSE
IDNTDKLLSLRDECKRMGLTVKAPNVLEGKLHFSVNADGHIIYGLGGIKGLGEGPIDDLL
EARGNLPFSDLFDLCSRTDPRKVNRRALEALIKSGALDELGAERSVLMSALDDALRAAEQ
SAANEAAGMGDLFGEVVPSAENGDPYRDHRRARAWTLRDILAGEKESLGSFLSGHPMDEF
QQEVRKFSPRSIRELTAGSKQWVAGLIVDVRLVKTQRGTMAVLQLDDGTGQIEATAYSEV
YEQNRDLLVKDQIVLADGRLQMDDFRGQLSLRAKSFTTLEAARSSRVRELKVGLSTDAVK
RGVSSELKRAFSAHSGDCPIVVEYKQPAGSAMLRFGERWRVTPTDTLLDQLKELVGQDAV
ELVYER
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggatcccaaattcgttcatcttcgtgttcattcagagttttcgctcaccgacggtttg
gtgcgtgtagggcctctgatgaagtcggtggccgcagcggatatgccgtcggtggctgtg
acggatcggactaatttctttgggttgattaaggcttataaggccgctgagcgtgaaggc
gtaaagctcattataggggccgattttgaggtactcgaggacgatgagcgccgttatcag
gcgacgtttttagcacagtccgcagagggttatcgaaacctcacacttcttatttctcag
gcttatcaggaaggtcagatcttgggtcgacctttgctaagacgtgattggattcaagcg
cgaagtcagggtttgattgcattgtctggtggcaggctaggtgacgtgggtcagcatctg
gttgcaggaagacgccaagaggcaaaagccgcacttgagtggtggatgtcgctgttcccg
gatcgttattacgttgagcttcagcgaacgggtagagagaacgaagaggactatcttcac
gcagcggtggcactggcagctgaagaaaactgcccggtggtggcgacaaacgaagtctgc
tttctcacgccagaggaatatgatgcccacgaggcgagagtctgtatcggtgatggtcga
acgctaaatgatccgcgccggccacggcacttttcagatcagcagtaccttcgatctccc
gatgagatgattgcgttatttgccgatattccagaggcaatcgagaatacgattcacatc
gcggctcgttgctcgactgaaatagaactgggtaaagcgtatttgcctgatttcccaaca
cctgaaggggtaagtatcgagcagcacctcgaagatttatctaacgagggactcgataag
cggctggcagcgctcaatattgacgatgatgaagtgtatcgtgcgcgtctcaaatttgag
ctcgatatcatcaatcaaatggggttcccgggctactttttggttgttatggacttcatc
cgctggggtaaggcaaacggcataccggtggggccaggcaggggttctggtgcaggatct
cttgtcgcttatgcgctcgaaattaccgacttggatccgatcgaatacgatctccttttt
gagcgatttttgaatccgcaacgggtttccatgcccgattttgatgtcgatttctgtatg
gatcgcagggatgaagtgatcgattatgttgcggaaacatacggtcgaaacgccgtatct
cagatcatcacattcggcaccatggcggcaaaggcggttgtacgagatgttgcgcgtgtg
caggacaagccttacgcattggccgataagatgtccaagctcataccctttgaggtgggt
atgacgctggaaaaggcgcttgagcaggaagagcaattagtcaaccttctcgaagaagac
ggcgctgcccaagagatttgggatatggcggtccagctcgagggattgacccgaaacgca
ggcaagcacgcaggtggtgtcgtcattgcgccctcacagctaacagatttctcgcccttg
ttttgtgatgaagaggggcatgggctcgtcactcaatacgacaagaacgatgttgaggat
gcgggtctcgtaaagtttgacttcttaggtttgagaacccttaccatcattgattgggcc
gtcgcgatgatcaatgagcgcgaggacattgcatcgcctgtcgatatcaatcagataccg
cttgatgatggtgcggtctatagtttgttgcaaagcgcagagaccacggctgtatttcag
ttggaaagccgaggtatgaaggagctgatcaagagtcttcgcccagactgttttgaagac
atcatcgctttagtggccctgttccggccggggccactccagtcgggtatggtcgaaaac
ttcatcgacagaaagcacggtagagagcaggtttcctacccggatgcgcagtatcagcac
gagtggttacagccaatattagagcccacttacggcatcattctgtatcaagagcaggtg
atgcaaatcgcgcaggagctggccggctacaccctcggtggggctgatctcttgcgccgc
gcgatgggtaagaaaaagcccgaggagatggcaaagcagcgctctgtttttgagggcggg
gctaaagacaaaggtgttgatccaacacttgctatgaagatttttgatctggttgaaaag
tttgcgggctatggctttaacaagtcgcactccgctgcttatgcattggtcagctaccaa
acagcttggttgaagcggcactacccctctgaattcatggcggcggtaatgagttctgag
attgataacacagataaattgctgagccttcgcgatgaatgtaagcgcatgggtttaacc
gttaaagcccctaatgttcttgaaggaaaattacatttttctgtgaacgcagacggccac
attatttacggtcttggcggcatcaaggggctgggtgaggggcctattgatgacttgctg
gaggcgagaggtaacttgccttttagtgaccttttcgacctgtgtagccggactgatccc
aggaaggtgaatcgccgagcgcttgaagcgttaataaagagcggggcccttgatgagctg
ggtgcggagcgatctgtgctgatgtcagcgttggacgatgcgcttcgcgccgctgagcag
tcggcggccaatgaggcagccggcatgggtgatttatttggtgaggttgttccctccgca
gaaaacggcgacccctatcgcgatcatcgacgtgcgcgtgcttggacactccgagatatc
ctcgccggtgaaaaagaaagcttagggagcttccttagcggccacccaatggatgagttc
caacaagaagtgcgtaagttttcaccccgttcgatacgtgagctgacggcaggcagtaaa
cagtgggtggcaggtttgattgtggacgttcgactcgtaaaaactcagcgcgggaccatg
gctgtgctgcagctggatgacgggacaggtcaaattgaagcgacggcctacagtgaggtt
tatgagcagaatcgtgacttactggtaaaggatcaaattgtgctcgcagatggccgactg
caaatggatgactttagagggcagctttctctgcgtgctaaatcatttacaacgctcgaa
gcggctcgcagctcacgcgttcgtgaacttaaagtcgggttgagcactgatgcagttaaa
cgtggggtttcgtctgaactgaagcgtgccttttcagcgcactcgggtgactgtccaatt
gttgtcgagtacaagcagcctgcggggtcagcaatgctgagatttggcgagcgatggcgt
gtcacacctaccgatacattgcttgatcagcttaaagagttggttggacaggatgccgtc
gagctcgtctacgagcgttag
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