Candidatus Paraluminiphilus aquimaris: E0F26_12275
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Entry
E0F26_12275 CDS
T09832
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
paqm
Candidatus Paraluminiphilus aquimaris
Pathway
paqm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E0F26_12275 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqm03019
]
E0F26_12275 (rhlB)
Enzymes [BR:
paqm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E0F26_12275 (rhlB)
Messenger RNA biogenesis [BR:
paqm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E0F26_12275 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
UZP75467
UniProt:
A0ABY6Q849
LinkDB
All DBs
Position
complement(2672714..2673928)
Genome browser
AA seq
404 aa
AA seq
DB search
MQLSENTAQTPENAASTAEDILFESLDLDGSLMRGIDALGFEKCSPIQAKILPYTLEGHD
AIGKAQTGTGKTAAFLITLFNDLLNNPIEGERYLAEPRAVVLAPTRELVMQIGDDARELG
KFTGLSTVTLIGGADYAKQLAKVNDRVTDIVVATPGRLIDFIQRGDMFLDRVESLVLDEA
DRMLDMGFIPQVKRIVRSTPRKEDRQTLLFSATFSPDIMNLARQWTFDPITVEIEPERVA
TENVEQRVYLLESRDRLNVLKRILAEPDATSVIVFANRRDQVRRVYERLNKQGLECGILS
GEVAQVKRTKTLERFKSGRIRVLIATDVAGRGIHVDGVSHVINYDLPEDPEDYVHRIGRT
GRAGEKGISISFASEDDAFLLPEIEALLGEPLKCSQVPEELLAD
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
ttgcaattgtctgaaaacactgcacaaacgcccgagaatgcggcatctaccgccgaggac
attttattcgaatcgctagatcttgatggctcgctcatgcgtggcatcgacgcactggga
ttcgagaaatgctcgccaattcaggcaaagatcctgccctataccctcgagggacatgat
gccatcggcaaggctcagacgggcacgggcaaaacagcggcgtttctgattacgttattc
aatgacctgctgaataatcctattgagggggagcgttaccttgcagagccacgggccgtc
gtactggcacccactcgcgagttggtgatgcagataggcgatgatgctcgggagctgggt
aagttcaccggactcagtactgtgaccctgattggtggcgcagattatgcaaagcaactg
gccaaggtgaatgatcgcgtgaccgatattgttgtcgcgacgccgggtcgtctgatcgac
tttatacagcgtggtgatatgttccttgaccgtgttgagtctctggttttggacgaggcg
gatcgcatgctggatatggggttcatccctcaagtaaagcgtatcgtgaggtcaacgccg
agaaaggaagaccgacagacattgttgttctcggcgaccttcagcccagatattatgaat
cttgcgcgccagtggacgtttgatccaattacagtggaaattgagcccgagcgcgtggct
acagaaaatgttgagcagcgcgtttaccttctggagagtcgagaccgactcaatgttttg
aagcgtattcttgccgagcctgatgcaacatcggttattgtttttgcaaatcggcgagat
caagtgcgccgtgtttacgaacggctgaataaacagggcctagagtgcggcattttatcg
ggcgaggttgctcaggtgaaacgtacgaagaccctggagcgttttaaatcaggccgtatt
cgtgtgttgattgcgacagatgtggccggccgagggattcacgtggatggagtcagtcac
gtcatcaactacgatctgcccgaggaccctgaggactacgtgcaccgcataggccgaact
ggccgcgcgggtgaaaagggcatttctattagttttgcgagcgaggacgacgcgttctta
ctgcctgaaattgaggcgcttctgggtgagccgctaaaatgctcgcaagtccctgaggaa
ttactcgcagactaa
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