KEGG   Phreatobacter aquaticus: E8L99_05570
Entry
E8L99_05570       CDS       T09827                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
paqt  Phreatobacter aquaticus
Pathway
paqt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:paqt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E8L99_05570 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:paqt03021]
    E8L99_05570 (rho)
   03019 Messenger RNA biogenesis [BR:paqt03019]
    E8L99_05570 (rho)
Transcription machinery [BR:paqt03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     E8L99_05570 (rho)
Messenger RNA biogenesis [BR:paqt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     E8L99_05570 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB NACHT AAA_25 Fungal_virus_P2_C AAA S1CSD-TOTE-2 Spore_III_AA ATPase_2 AAA_14
Other DBs
NCBI-ProteinID: QCK85284
UniProt: A0A4D7QIM8
LinkDB
Position
complement(1206005..1207270)
AA seq 421 aa
MQQIKLQDIKSKSPTELLAFAEELQVENASTLRKQEMMFACLKQLAAQEIDIIGEGVIEV
LQDGFGFLRSPDANYLAGPDDIYVSPSQIRRFGLRTGDTIEGQIRSPKEGERYFALVKVN
LINFEEPEKARHKVNFDNLTPLYPNQRLKMESDDPTKKDFSARVMDVVVPLGKGQRALIV
APPRTGKTVLLQNIAQSITRNHPECYLIVLLIDERPEEVTDMQRSVNGEVISSTFDEPAT
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVADKRTFPS
IDITRSGTRKEELLVAADILKKMYVLRRILNPMGTVDAIEFLLDKLRQTKSNGDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcagcagatcaaactccaggacatcaagtccaagtccccgaccgagcttctggctttc
gcagaggagctgcaggtcgagaacgcgtcgacgctgcgcaagcaggaaatgatgtttgcc
tgcctcaagcagctggctgcgcaggaaatcgacatcatcggcgagggcgtcatcgaggtc
ctgcaggacggtttcggcttcctgcggtcaccggatgccaattatctcgctggtccggac
gatatctacgtgtctccgtcgcagattcgcaggttcggcctgcggaccggcgacacgatc
gagggtcagatccgatcgccgaaggagggtgagcgctatttcgccctggtgaaggtgaac
ctgattaatttcgaagagccggaaaaggctcgccacaaggtcaatttcgacaacctcacc
ccgctctatccgaatcagcgcctcaagatggagagcgatgatccgacaaaaaaagatttc
tcggcccgggtgatggacgtggtggttccgctcggcaagggccagcgcgcgctgatcgtt
gcgccgccgcggactggtaagaccgttcttctgcagaacatcgcgcagtcgatcacgcgc
aatcaccccgagtgctacctgatcgtccttttgatcgatgagcgtccggaagaagtcacg
gacatgcagcgctcggtcaatggcgaggtgatctcctcgaccttcgacgagccggcaacg
cgtcacgtccaggtcgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacggc
cgcgacgtggttattctcctcgactcgatcacccgtctcggccgcgcctacaacacggtg
gtaccgtcgtccggcaaggtgctgaccggcggtgtcgatgcgaacgccctgcagaggccc
aagcgcttcttcggcgcggcgcgcaatatcgaagaaggcggctcgctgaccatcatcgcg
acagcgctgatcgatacgggcagccggatggatgaagtgatctttgaagagttcaagggc
accggcaactccgaaatcattctcgaccgcaaggtcgccgacaagcgcaccttcccctcg
atcgacatcacccgctcgggaacgcgcaaggaagagctgctggtcgcggccgacatcctc
aagaagatgtatgtgctgcgccggatcctcaatccgatgggcacggtggatgccatcgag
ttcctgctcgacaagctcaggcagacgaagtcgaacggtgacttcttcgattcgatgaac
acctga

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