Phreatobacter aquaticus: E8L99_07625
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Entry
E8L99_07625 CDS
T09827
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
paqt
Phreatobacter aquaticus
Brite
KEGG Orthology (KO) [BR:
paqt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqt03019
]
E8L99_07625 (hrpB)
Enzymes [BR:
paqt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E8L99_07625 (hrpB)
Messenger RNA biogenesis [BR:
paqt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E8L99_07625 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
CON_HrpB
Flavi_DEAD
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QCK85642
UniProt:
A0A4D7QN99
LinkDB
All DBs
Position
1640533..1642992
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AA seq
819 aa
AA seq
DB search
MFDTHLPIDEALPALTLALSGHARAVLVAPPGAGKSTRVPLVLAREAWAAEGKILVLEPR
RIAARAVADRMAKTLGEPVGATVGLRVRFGSRVSAKTRIEVVTEGIFTRMILDDPTLAGV
SAVLFDEFHERSLDADLGLALALDAQGALRDDLRILVMSATLDGARVAKLLGDAPVVESR
GRAFPVETRFVGRDPVARLEDEVARTVRRALAEEPGSVLVFLPGAAEIRRTGEMLAATVK
DPAVDIVQLFGALDPREQDRAVEPAPAGRRKVVLATSIAETSLTIEGVRVVVDSGLARVP
RFEPDLGLTRLETVRVSRAAADQRRGRAGRTEPGICYRLWEEAQEGSFPAYATPEILAAD
LSSLLLDCAAWGVTDPLTLSFLDSPPKPALAEARLLLETLGALDGTGRITDEGRQLRALP
LSVRLARMVVDGARRGEGRIAADLALLVSERGLGGDDVHLGYRLDRLRHERGRRAEDSRR
MAQGWLREVQAAPDIGSGPERAGAVLALAFPDRIAKARGRDGEFVLANGRGGAVDAASPL
AREPFLAVAEIGGMAARSRILSAAPITLVEIEEAFSDRIQARDEVTFDKAAAALRAKRVK
RLGAILLGEQTLAVPQNEASAEALAQGIAAIGIARLPWSKSQLALRHRIAFLRRVDESFP
DLSDETLATSVTDWLSPHILGKTALSQIGADDLGVALDQLVPWDVKRRVENDLPSHFDAP
SGQRHPIDYEGEEPTLSIRVQELFGLAVHPSVARGKIPLVVELLSPAHRPVQVTRDLPGF
WKGSYQAVKSEMKGRYPRHPWPDDPGSAAATHRAKPRGT
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgatacgcacctgcccatcgacgaggccctgccggcgctgactttggcgctgtcc
ggccatgcccgcgccgttctggtcgccccgcccggcgccggcaagtcgacccgcgtgccg
ctggttctggcgcgcgaggcctgggccgccgagggcaagatcctcgttctcgaaccccgc
cggatcgccgcccgcgcggtggccgaccgcatggcgaagacgctgggcgagccggtcggg
gcaacggttggcctgcgcgtgcgcttcggctccagggtctcggcgaagacccgcatcgag
gtggtcaccgagggcatcttcacccgcatgatcctcgacgacccgacgcttgccggcgtg
tcggcggtgctgttcgacgagttccacgagcgaagcctcgatgccgatctggggcttgcg
ctggcgctcgacgcccagggcgccctgcgcgacgacctgcgtatcctcgtcatgtcggcg
accctcgatggcgcgcgggtcgcgaaacttctgggcgatgcgccggtcgtcgaaagccgg
ggccgcgcctttcccgtcgagacacgcttcgtcggccgcgatcccgtcgcgcggctggag
gacgaggtcgcccgcacggtcaggcgggcgctggccgaggagccgggttcggtgctggtg
ttcctgcccggcgcggccgagatccgccgcacgggcgagatgctggccgcgacggtgaag
gaccccgccgtcgacatcgtccagctgttcggcgcgctcgatccgcgcgaacaggaccgg
gccgtcgagcccgcgcccgccggccgccgcaaggttgtgctggcaacctcgatcgccgag
acctcgctgaccatcgagggcgtgcgggtggtggtcgattcaggtcttgcccgcgtgccg
cgtttcgagcccgatctcggtctgacgcggctggaaaccgtgcgggtgtcgcgcgccgct
gccgaccagcggcgcggccgggccggccgcaccgagccgggcatctgctaccgtctctgg
gaagaggcgcaggagggatcgttcccggcctatgcgacgccggaaatcctggcggccgac
ctctcctccctgctgctcgactgcgccgcctggggcgtcacagatccgctgacgctgagc
tttctcgattcgccgccgaagccggccctggcggaagcccggctgctgttggagacgctg
ggcgcgctcgatggcacaggccggatcaccgacgagggccggcagctcagggcgctgccg
ctcagcgtccggcttgcccgcatggtggtcgacggggcccgccggggcgagggccggatc
gcagccgatctggcacttctggtctccgaacgcggccttggcggcgacgatgtccatctg
ggctaccggctggaccgtctgcgccacgaacgcgggcggcgcgccgaggacagccgtcgc
atggcgcagggctggctcagggaggttcaggcggctcccgatatcggctcgggtccggag
cgcgccggcgcggtgctggccctggcctttcccgaccgcatcgccaaggcacgtggccgc
gacggcgaattcgtgctggcgaatggccggggtggcgcggtggatgcggcttccccgctg
gcgcgcgagccgttcctggcagtcgccgagatcggcggcatggccgcgcgctcgcgcatc
ctgtcggcggcccccatcacgctggtcgagatcgaggaggcgttctcggaccgcatacag
gcacgcgacgaggtgactttcgacaaagccgctgcggcgctcagggccaagcgcgtgaag
cggctcggcgcgatcctgctcggcgagcagacgctggcggttccgcagaacgaggcgagc
gccgaagctctggcccaggggatcgcggcgatcggcatcgcgcgcctgccctggtcgaag
tcgcagctggcgcttcgccatcgcatcgcattcctccgccgcgtcgacgagagctttccc
gacctctcggacgaaacgctggccacgagtgtcaccgactggctcagcccgcacattctc
ggcaagacggcgctgtcacagatcggagccgatgatctgggcgttgccctcgaccagctc
gtgccctgggatgtgaagcggcgggtggagaacgacctgccgagccatttcgatgcgccg
tccggccagcgtcaccccatcgattacgagggcgaggagccgactttgtcgatccgcgtg
caggaattgttcggccttgccgtccatccaagcgtggcgcgcggcaagatcccgctggtg
gtcgagctgctgtcaccggcccatcggccggtgcaggtcacgcgcgacctgcccggcttc
tggaaagggtcctaccaggcggtgaaatccgagatgaaggggcgctatccccgccatccc
tggccggatgatccgggctcggcggccgccacccaccgggcgaagccgcgcggcacctga
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