Phreatobacter aquaticus: E8L99_15795
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Entry
E8L99_15795 CDS
T09827
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paqt
Phreatobacter aquaticus
Pathway
paqt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paqt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E8L99_15795 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paqt03021
]
E8L99_15795 (rpoC)
03400 DNA repair and recombination proteins [BR:
paqt03400
]
E8L99_15795 (rpoC)
Enzymes [BR:
paqt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E8L99_15795 (rpoC)
Transcription machinery [BR:
paqt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E8L99_15795 (rpoC)
DNA repair and recombination proteins [BR:
paqt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E8L99_15795 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QCK87115
UniProt:
A0A4D7QJ79
LinkDB
All DBs
Position
3361252..3365457
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQEVANLFNPTTQPATFDQIKISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMPLKDLERILYFEYYCVLEPGLTSLKERQLLSEEEYVRAQDEFGDDSFTA
MIGAEAIRELLRGLDLEKLAADTRKEISEATTELKPKKLAKRLKIIEAFIQSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PEMKLHQCGLPKKMALELFKPFIYARLDAKGLSATVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDIVLGLYYVSLMSDGMPGQGKAFGNIGELEHALA
NKVVTLHSKIKYRWEGLDPDGVMVRKIYDTTPGRVLLGQLLPKSAKIQFDAANKLMTKKE
ISGMIDTVYRFCGQKESVIFCDRVMALGFYHAYKAGISFGKDDMLVPENKWPIVEETRSL
TKDYEQQYLDGLITYGEKYNKVVDAWAKCSDRLAQEMMGRISAVRKDENGRDLPINSIYM
MSHSGARGSPTQMRQLAAMRGLMAKPSGEIIETPIISNFKEGLSVMEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITERDCHTDRGIGMRAIVDAGQVVATLGQRILGRSA
ANTVTDPSSGAVIVEAGRMILEKDVEAITAAGIQEVKIRSVLTCETKVGVCGQCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVVDTSFIEATFEGTIRIRNRSI
VKNSDGELIAMGRNMAVVIVDADGSERATHRIQYGAKLRVDEGAKVKRGQRIAEWDPYTR
PIITEIDGILGFEDLVDGQSIAETTDEATGFTKRIVTDWRTSTRSADLKPSLVIKDANGK
IQKLPRGTDARYALAVEAVISADAGAQVYGGDVIARIPLESAKTRDITGGLPRVAELFEA
RRPKDAAIIAEVSGIVRFGKDYKQKRRLTIEPFEADAEAAEYLIPKGKHIHLQDGDEVQK
GDFIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TDPGDTELIQGDQVDASEMEEANEAMADDKNKRPATGVPVLLGITKASLQTRSFISAASF
QETTRVLTEAAVNGKSDTLEGLKENVIVGRLIPAGTGAMVSRIREIAVKRDDLILDEKQK
AAASVKARAPAAVAAIEAPQA
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcgcgaatctcttcaatccgacgacgcagccggcgactttcgatcag
atcaagatctcgatcgcgagcccggaaaagatcctgtcgtggtcgttcggcgagatcaag
aagccggaaaccatcaactaccggacgttcaagccggagcgtgatggccttttctgcgct
cggatcttcggacccatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgcggcgtcgaagtcacgctgtcgcgcgtccgccgc
gagcgcatgggccatatcgagctcgccgctcccgttgcccatatctggttcctgaagtcg
ctgccgagccgcatcggcctgctgctcgacatgccgctcaaggacctcgagcgcatcctc
tatttcgaatattactgcgtgcttgagccgggcctcacctcgctgaaggagcgtcagctc
ctgtccgaggaagagtatgtccgcgcccaggacgagttcggcgatgactcgttcaccgcc
atgatcggcgccgaggccatccgcgaattgctgcgcggcctcgacctcgagaagctggct
gccgacacccgcaaggaaatctcggaagccaccaccgagctgaagccgaagaagctcgcc
aagcgcctgaagatcatcgaggccttcatccagtcgggcaacaagccggaatggatgatc
ctgacggtggttccggtcattccgccggacctgcgtccgctggtgccgctggacggcggc
cgcttcgcgacctccgacctcaacgatctctatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgccccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgctcgctgacatgctgaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtcgtcggt
ccggaaatgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgcccggctcgacgccaagggtctctccgccaccgtcaagcaggcgaag
aagctggtcgagaaggagcgtccggaggtctgggatatcctcgatgaggtcatccgcgag
catccggtgctcttgaaccgcgctcccaccctccatcgcctcggcatccaggccttcgag
cctgtgctgatcgagggcaaggcgatccagctgcacccgctcgtctgctcggccttcaac
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatcccgccaacggcgcgccg
atcatcgtgccgtcgcaggatatcgtgctcggtctctactacgtctcgctgatgtcggac
ggcatgcccggccagggcaaggccttcggcaatatcggcgagctcgagcatgcgctggcc
aacaaggtcgttacccttcactcgaagatcaagtatcgctgggaaggcctcgatcccgac
ggcgtcatggtccgcaagatctatgacaccacgccgggccgtgtgctcctcggtcagctc
ctgccgaagtccgccaagatccagttcgacgcagccaacaagctgatgacgaagaaggag
atctcggggatgatcgacaccgtctaccgcttctgcggtcagaaggagtcggtgatcttc
tgcgaccgcgtcatggcgctcggcttctaccacgcctacaaggccggcatttccttcggc
aaggacgacatgctcgtgccggagaacaagtggccgatcgtcgaggagacccgctcgctc
accaaggactacgagcagcagtatctcgacggcctgatcacctatggcgagaagtacaac
aaggtcgtcgacgcctgggccaagtgctcggaccgtctcgcccaggagatgatgggccgc
atctcggctgtccggaaggacgagaacggccgcgatctgccgatcaactcgatctacatg
atgagccactcgggtgcccgtggttcgccgacccagatgcgccagctcgccgccatgcgc
ggcctgatggccaagccgtccggcgagatcatcgagaccccgatcatctcgaacttcaag
gaaggcctgtccgtgatggagtacttcaactccacccacggtgcgcgtaagggtctggcc
gacacggcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtggcc
caggactgcatcatcacggagcgggactgccataccgaccgcggcattggcatgcgtgcc
atcgtcgacgccggccaggtggttgccaccctcggtcagcgcatcctcggtcgttcggcg
gcgaataccgtcaccgatccgtcgtcgggtgctgtgatcgtcgaagccggccgcatgatc
ctcgaaaaggatgtcgaggcgatcaccgccgccggcattcaggaggtcaagatccgctcg
gtgctcacctgcgagaccaaggtcggcgtttgcggccagtgctatggccgtgaccttgcc
cgcggtaccccggtcaatatcggtgaagctgtcggcgtcatcgccgcgcagtccatcggt
gagccgggcacccagctcaccatgcgtaccttccacatcggtggcgctgcccaggtggtc
gatacctcgttcatcgaggcgaccttcgaaggcacgatccgcatccgcaaccgttcgatc
gtcaagaattcggacggcgagctgatcgcgatgggccgcaacatggcggtcgtcatcgtc
gatgccgacggctcggagcgcgcgacccaccgtatccagtacggtgcgaagctgcgggtc
gacgagggcgccaaggtcaagcgtggccagcgcatcgccgagtgggacccctacacgcgt
ccgatcatcaccgagatcgacggtatcctcggcttcgaggatctggtcgacggtcagtcg
atcgcggaaaccaccgacgaggcgactggcttcaccaagcgtatcgtcaccgactggcgt
acctcgacgcgctcggcggacctcaagccgtcgctggtcatcaaggacgccaacggcaag
atccagaagctgccgcgcggcaccgacgcgcgctacgccctggcggtggaagcggtcatc
tcggccgatgccggtgcccaggtctatggcggtgacgtcattgcgcgtatcccgctggaa
agcgccaagacgcgcgacatcaccggtggtctgccgcgtgtcgccgaactcttcgaggcc
cgtcgtccgaaggatgccgcgatcatcgcggaagtctccggcatcgtgcgcttcggcaag
gactacaagcagaagcgtcgcctcacgatcgagcccttcgaggccgatgccgaggcggcg
gaatatctgatcccgaagggcaagcacatccatctgcaggatggtgacgaagtccagaag
ggtgacttcatcgtcgacggcaacccggcgccgcatgacatcctggcgatcaagggcgtg
gaggagcttgctgcctacctcgtcaacgagatccaggaagtctaccgactgcagggcgtc
gtcatcaacgacaagcacatcgaggtcatcgtccgtcagatgctccagaaggtcgagatc
accgatcccggcgataccgagctgatccagggcgaccaggtggatgcgtccgagatggaa
gaggccaacgaggccatggctgacgacaagaacaagcgcccggccacgggcgtgcctgtc
cttctcggcatcaccaaggcttcgctgcagacccggtcgttcatctcggcggcgtccttc
caggaaaccacgcgcgtgctcaccgaggctgccgtcaacggcaagtcggatacgctcgag
ggcctgaaggagaacgtcatcgtcggtcgtctgatccccgccggcaccggcgccatggtc
agccgcatccgcgagatcgccgtgaagcgcgacgatctgatcctggacgagaagcagaag
gctgcagccagcgtcaaggcgcgtgcaccggctgccgtcgctgccatcgaggcaccccag
gcctga
DBGET
integrated database retrieval system
