Phreatobacter aquaticus: E8L99_16040
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Entry
E8L99_16040 CDS
T09827
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
paqt
Phreatobacter aquaticus
Brite
KEGG Orthology (KO) [BR:
paqt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paqt03016
]
E8L99_16040 (rnd)
Enzymes [BR:
paqt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
E8L99_16040 (rnd)
Transfer RNA biogenesis [BR:
paqt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E8L99_16040 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QCK87163
UniProt:
A0A4D7QMF7
LinkDB
All DBs
Position
complement(3400624..3401796)
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AA seq
390 aa
AA seq
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MMLITSSSELAAICARLAKHPFVTVDTEFLRETTFWPKLCVIQLASPDEAVAIDALAPDM
DLAPFFDLMVDPGIVKVFHAARQDVEIIWHLSKRIPAPLFDSQVAAMVLGYGDSISYDQL
VQRTNGTQLDKTSRFTDWSKRPLSEAQIIYAIADVTHLRDVYLKLTGELEKRGRSDWVAE
EMRVLTSPETYRQEPERAWERFRTRVRKPRELAVLMEVAAWREREAQMRNVPRSRVLKDD
SLIDIAMTGPKTVEALGAMRSIPKGWERSRDGISVVEAAVRGLALDPKTLPAIDKHRPPS
QAQSATVELLKVLLKMVAEKHHVAAKVVATSDDLDRIAEDDEADIGALKGWRRELFGEKA
LALKHGKLALAIERGRVVTIENAMVASLTA
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgatcacctcctcgtctgaactcgcggccatctgcgcgcgacttgccaagcac
ccgttcgtgacggtcgataccgagttcctgcgcgaaacaacgttctggccgaagctctgc
gtcatccagctcgccagccccgacgaggccgtggcgattgatgcgctggcgcccgacatg
gatcttgcgccatttttcgacctgatggtcgatcccgggatcgtcaaggtgttccatgcc
gcgcgccaggacgtggagatcatctggcacctgtcgaagcgcattccggccccgctgttc
gacagtcaggtggccgcgatggtgctcggctatggcgattcgatctcctacgaccagctg
gtccaacgcaccaacggcacgcagctcgacaagacgagccgcttcaccgactggtcgaag
cggcccttaagcgaggcgcagatcatctatgcgatcgccgatgtcacccatctgcgcgat
gtctatctgaaactgaccggcgaactcgagaagcgcggccgcagcgactgggtcgccgag
gaaatgcgcgtgctgacctcgcccgagacctaccggcaggagcctgagcgggcgtgggag
cggttccgcacccgcgtgcgcaagccgcgcgaactcgctgtcctcatggaagtcgcggcc
tggcgcgaacgcgaggcgcagatgcgcaacgtgccgcgctcgcgcgtgctcaaggacgac
agcctcatcgacatcgcgatgaccgggccgaagaccgtcgaggcgctgggcgccatgcgc
tcgatcccgaagggctgggagcgctcgcgcgacggcatctctgtggtggaggccgcggtt
cgcggccttgcgctcgaccccaagacacttcccgcgatcgacaagcaccggccgccgagc
caggcgcagtccgcaacggtcgaactgctcaaggtgcttctcaagatggtggccgagaaa
caccacgtagccgccaaggtggttgcgacatcggatgacctcgaccgcatcgccgaggat
gacgaggccgatatcggcgccctcaagggctggcggcgcgagctgttcggcgagaaggct
ctggcgctgaagcacggcaagctcgcgcttgccatcgaaagaggccgggtggtcacgatc
gaaaacgcaatggtcgcatccctgacggcgtga
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