Pectobacterium aquaticum: DMB82_0001000
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Entry
DMB82_0001000 CDS
T07653
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DMB82_0001000 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paqu03021
]
DMB82_0001000 (rpoC)
03400 DNA repair and recombination proteins [BR:
paqu03400
]
DMB82_0001000 (rpoC)
Enzymes [BR:
paqu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DMB82_0001000 (rpoC)
Transcription machinery [BR:
paqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DMB82_0001000 (rpoC)
DNA repair and recombination proteins [BR:
paqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DMB82_0001000 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UEM39660
LinkDB
All DBs
Position
220148..224371
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELTETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEIKSIEGEVTHQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEQWCDMLEENSVDAVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
NNAKFVMNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGSEVSGGETVANW
DPHTMPVVTEVSGFIRFADMIDGQTITRQTDELTGLSSIVVLDSAERTGSGKDLRPALKI
VDGKGEDVLIPGTDMPAQYFLPGKTIVQLEDGVQIGAGDTLARLPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGTEFLEGEQAEFSRIKIANRKLEADGKITATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEAPI
VPQVSADEASANLAELLNAGFGSSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcgtggtcttttggtgaagttaaaaag
ccagaaaccatcaactaccgtacgttcaagcctgagcgtgacggccttttctgtgcccgt
atctttgggccagtaaaagattatgagtgcttatgcggtaagtataagcgcctgaaacac
cgcggtgttatttgtgagaaatgcggcgttgaagtgacccaaactaaagtacgtcgtgag
cgtatgggtcacatcgagctggcttctccgactgcgcacatctggttcctgaagtcactg
ccttcccgtatcggtttgctgttagatatgccgctgcgtgatattgagcgcgtgctttat
tttgaatcttatgtcgtggttgaaggcggtatgaccaaccttgagcgccgtcagatcctg
actgaagagcagtatctggatgcgctggaagagtttggtgatgaattcgacgccaaaatg
ggtgccgaagcgatccaggctctgctgaagaacatggatctggagcaggaatgcgagcaa
ctgcgtgaagagctgaccgaaaccaactctgaaaccaaacgtaagaagctgactaagcgt
attaagctgctggaagcattcgtacagtctggtaacaagccagagtggatgatcctgacc
gttctgccagtactgccaccagatttgcgtcctttggttccgctggatggtggtcgtttc
gcgacttccgacctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtttgaaa
cgtctgctggatctggctgcgccggatatcatcgtacgcaacgaaaaacgtatgttgcag
gaagcggttgatgccctgctggataacggccgtcgtggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacaggggcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgttggtccatac
ctgcgtctgcatcagtgtggtctgccgaagaaaatggcactggagctgtttaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagccgccaagaaaatg
gttgagcgcgaagaagctgtcgtatgggatatcctggacgaagtcatccgcgaacaccca
gtactgctgaaccgtgcaccaacactgcaccgtttgggtatccaggcatttgaaccggtt
ctgatcgaaggtaaagcgatccaactgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgtacacgtaccgttgacgctggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcccctgcgaatggtgagccaatcatc
gttccttctcaggacgtggtattgggtctgtattacatgacgcgtgactgtgttaacgcc
aaaggcgaaggcatggtgctcacgggtccgaaagaagctgaacgcgtttatcgcgctggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcacggaagagatcaagagcatcgaa
ggtgaggttacgcatcagacgtcgattatcgatacgactatcggtcgcgccatcctgtgg
atgatcgtaccgaaaggtctgccgtactcgatcgttaaccagcctctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattttgggtctgaagccgacagttatcttc
gctgaccagactatgtacaccggttttgcttacgcggcgcgctctggtgcttccgtaggt
atcgatgacatggttatcccggagaaaaaagccgagattatcgaagaagccgaaaccgaa
gttgccgagattcaggagcagttccagtctggtctggttaccgcgggcgaacgctataac
aaagtgatcgatatctgggcagcggcgaacgaacgtgttgcgaaagcgatgatggaaaac
ctgtccgttgaggatgtggttaaccgtgatggcgtggttgagcagcaggtttctttcaac
agcatctttatgatggctgactccggtgcgcgtggttctgcagcacagattcgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagatggttcgatcatcgagacgccaattacc
gcaaacttccgtgaaggtctgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttatctgactcgtcgtctg
gttgacgttgcacaggatctggttgtgaccgaggacgattgtggtacccacgaaggtatc
atgatgacgccggttatcgagggtggcgatgttaaagagccactgcgtgagcgcgtactg
ggccgtgtaacggctgaagacgtgatcaaaccgggcaccgcggacattctggttccacgt
aacacgctgctgaatgagcagtggtgtgacatgttggaagagaactccgttgacgccgtt
aaagtacgttcagtggtaagttgcgaaaccgactttggcgtgtgcgccaattgctacggt
cgcgatctggctcgtggtcatatcatcaacaaaggtgaggctatcggggttatcgcggca
cagtccatcggtgagccaggtacacagttaaccatgcgtacgttccatatcggtggtgcg
gcatcgcgtgcggcagctgagtccagcattcaggtgaaaaacaaaggtagcctgaaactg
aacaacgcgaagttcgttatgaacagcaacggtaaactggttattacttcacgtaatacc
gaactgaaactgatcgacgaattcggacgtaccaaagaaagctataaagtgccttacggt
gcagtgatggcgaagggtgacggctcagaagttagcggtggcgaaaccgtcgcaaactgg
gacccgcataccatgccagtggtgaccgaggtaagcggtttcatccgctttgctgatatg
attgacggtcagaccattactcgccagaccgacgaactgactggtttgtcctctatcgtg
gttctggatagcgcagagcgtaccggtagtggtaaagacctacgtccagcactgaaaatc
gttgatggcaaaggcgaagatgtactgattccaggtactgatatgcctgctcaatacttc
ctgccgggtaaaacaattgttcagctggaagatggggttcagattggtgccggtgataca
ttggcgcgtctccctcaggaatccagtggtaccaaggacattaccggtggtctgccacgc
gtagccgacctgtttgaagcccgtcgtccgaaagagccggctattctggcagagatcagc
ggtatcatttccttcggtaaagaaaccaaaggtaagcgccgtctggtaatttctccgttg
gatggcagcgatgcttacgaagagatgattccgaaatggcgtcagcttaacgtgttcgaa
ggtgaagttgtggagcgtggtgacgttgtttccgacggcccagagtctccgcacgatatt
ctgcgtctgcgtggtgtacatgcagtaacgcgttatatcaccaacgaagttcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagcgctggtggcacggagttcctggaaggcgaacaggca
gaattctctcgcatcaagattgctaaccgcaagttggaagcggatggcaagattacggca
acgttcagccgcgatctgctgggtatcaccaaagcatctctggcgaccgagtccttcatt
tctgcggcatcgttccaggaaaccactcgcgtactgaccgaagctgctgttgctggtaag
cgtgatgaactgcgtggcctgaaagagaacgttatcgtaggtcgtctgatcccagcgggt
acgggttatgcgtatcatcaggatcgtatgcgccgccgtcaggcgggtgaagcgcctatc
gtacctcaggtgagtgccgatgaagcttctgctaacctagccgaactgctgaacgcaggc
tttggtagcagcgacgacgagtaa
DBGET
integrated database retrieval system
