Pectobacterium aquaticum: DMB82_0003645
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Entry
DMB82_0003645 CDS
T07653
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMB82_0003645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqu03019
]
DMB82_0003645
03009 Ribosome biogenesis [BR:
paqu03009
]
DMB82_0003645
Enzymes [BR:
paqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DMB82_0003645
Messenger RNA biogenesis [BR:
paqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DMB82_0003645
Ribosome biogenesis [BR:
paqu03009
]
Prokaryotic type
rRNA helicases
DMB82_0003645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
UEM40136
LinkDB
All DBs
Position
763059..764975
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AA seq
638 aa
AA seq
DB search
MTDLFTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDVET
LAAALLKMAQGERPLILPPDPAFRPRREYRDRDESRSDSRGDRRREPRDARDSREPRDGD
RPQRRERRDAGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGGRPAGAGGERRDGAAPRRSFG
GGERREGNANGGERRERSFNRDAAAPRAPRRRPADAGQ
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatttacttctttttccgatttggggctgtctgctcctattattaacgcc
ctgaccgatctgggctatgaaaaaccatcgccaattcaggctgaatgtattccccatctg
ctgagcggtcgcgatgtgctgggtatggcacagactggcagtggtaaaactgcggctttt
gctctgccattactcaataatttaaagcctgagttaaaagcgcctcagatgttggtgttg
gctccaacccgcgaactggctgtccaggttgctgaagcctgtaatgattttgccaagcat
atgcatggcgttaacgtcgttgccctgtacggtggccagcgttatgacgtccaactgcgc
gcattgcgtggtggagcacagatcgttgtgggtacgccgggccgtctgttggatcacctg
aagcgtggtacgctggatctgtccaacctgagtggtttggtgctggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgctgaa
catcagactgcgctgttctctgcgaccatgcctgaagcgattcgccgcattacgcgccgt
ttcatgaaagatccacaagaagttcgcattcaatcaagtgtgactacgcgtccagatatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcgctggtacgtttcctg
gaagcagaagattttgatgcggcgattattttcgttcgtaccaaaaacgcgacgctggaa
gtggccgaagccctggagcgtagcggttacaacagcgccgcgctgaacggtgacatgaat
caggcgctgcgtgaacaaacgctggagcgtctgaaagatggtcgtctggatatcctgatc
gcaaccgacgttgcggcgcgtggtcttgacgttgagcgtatcagcttggttgtcaactac
gatatcccaatggattccgagtcttacgtccaccgtattggtcgtacgggccgtgcaggt
cgtgcgggtcgtgcactgctgtttgttgaaaaccgtgaacgccgcctactgcgcaacgtt
gaacgcacaatgaagctgacgattcctgaagtggaattgccaaatgcagaattgctgggc
caacgccgtctggctaagtttgccgctaaagtacagcaacaactggaaagcagcgatctg
gatatgtaccgtgcgctgttgacgaaattgcaaccgcaggaagagttggatgttgaaacg
ctggctgctgcgctgctgaaaatggcgcaaggcgaacgtcctctgattctgccgccagat
ccggcattccgtccgcgtcgcgaataccgcgatcgtgatgagtctcgtagtgattcacgt
ggcgatcgtcgccgtgaaccccgcgatgctcgcgattcccgtgaaccccgtgatggtgac
cgtccacagcgtcgtgagcgtcgtgatgcgggtgaaatgcaactgtatcgtatcgaagtg
ggtcgtgatgacggcgttgaagttcgccacattgttggtgctatcgccaacgaaggggat
atcagcagccgctacatcggtaacatcaagctgttcgcgtctcactcgacgattgaactg
ccgaaaggtatgccgggcgacctgttatcacactttacccgcacgcgtattctgaacaaa
ccaatgaatatgcaattgctgggtgatgcagtcgcacagccagaacgtcgtggtggtggt
cgtcctgcgggtgcgggcggcgaacgtcgtgatggcgcagcgccacgtcgctctttcggc
ggtggtgaacgccgtgaaggtaacgctaacggcggtgagcgtcgcgaacgttctttcaat
cgtgatgccgctgcaccgcgtgctccacgccgtcgtcctgctgatgctggtcaataa
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