Pectobacterium aquaticum: DMB82_0004110
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Entry
DMB82_0004110 CDS
T07653
Name
(GenBank) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
paqu
Pectobacterium aquaticum
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
DMB82_0004110
Enzymes [BR:
paqu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
DMB82_0004110
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Gene cluster
GFIT
Motif
Pfam:
CBM-like
fn3_3
Rhamnogal_lyase
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
Motif
Other DBs
NCBI-ProteinID:
UEM40222
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Position
871546..873276
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AA seq
576 aa
AA seq
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MKRSVLLLVGAMLAPYGYSAQDNAVSLSVSGLNTVLDNGLLKVAFGEDGSAVSMVTGGKN
IVTNLSGAARDPSKTRSAYLDYYINDAHAKGVKDFVPERVEVLRNDRDIAHVAYIDDRDG
LLRLEYHLIMRRGVSGLYSYVVAENSGNQDVKVSELRNVYRFDPARLDHLYNGDRQGKPL
LYSQLEASPKVQDETWRLPDGSIYSKYDFAGYMRTAPFWGVFGNGVGAWLIHGNREYFSG
DALKQDLLVHQDAIILNYMTGSHFGTPDMIAPPSWKKFYGPWLLYINQGDTEKMLADAQR
QALTETVNWPYNWVNDSRYARDRTQVSGRVASQQPVTVVLSSSLDEPFDVQTRGYSYQAT
TDAQGNFAIPHVRPGNYHLAVYANSGTQPGIVAEKTLSVSGDKQALPVITLPKAEPVVWA
IGQANRQASEFRFGNEARNTRWQQEVPANLTFDIGRSDYQRDWYYAQTKPGKWDIRFALQ
PERKTYFLNIALAAASNSGMSEPTLPQLAVAVNGSTLETLTYANDKTIYRGALQSGRYHI
ARIPVSSRFLKNGNNTITLQLKGGSVMYDVVTLSEE
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcgatctgtcttgttgttggtgggggccatgctggcaccctatggctatagcgcg
caggataatgcggtgtcgttatctgtttctggtttgaataccgttctggataacggctta
ctaaaagtcgcgttcggggaggatggcagcgcggtgagcatggtgacgggaggcaaaaat
atcgtcaccaacctgtccggtgcggcgcgtgacccaagcaaaacgcgtagcgcctacctc
gattactatattaacgatgcgcatgctaaaggcgtcaaagattttgtccccgagcgggta
gaggtgctgcgcaacgatcgagatatagcgcatgtggcctatatcgacgatcgggacgga
ctgttacggcttgaatatcatctgattatgcgtcgtggtgttagcgggctttatagctat
gttgtcgctgagaatagcggaaatcaggatgttaaagtcagtgaactacgtaacgtttat
cgcttcgatcccgctcggttagatcatctttacaatggcgatcgtcagggtaaaccgctg
ctctacagccagcttgaagcgtcgccgaaggtgcaggatgaaacctggcgattgccggat
ggcagcatttattccaaatatgattttgccggctatatgcgtaccgcgcctttctggggc
gttttcggcaatggcgtgggagcgtggctgattcatggcaatcgtgagtatttctctggc
gatgcgctcaagcaggatctgttggtgcatcaggatgcgatcattctgaactacatgacg
ggctcgcactttggtacgccggatatgatagccccaccgagctggaaaaaattctacggt
ccgtggctgctgtatatcaatcagggcgataccgaaaaaatgctggcggacgctcagcgt
caggcactgacggaaaccgtcaactggccgtacaactgggtcaacgattcccgctatgcg
cgcgatcgcacgcaggtgagcggacgcgttgccagccagcagccagtgaccgtcgtgctt
tcgtcatcgctggatgaaccgtttgatgtgcaaacccgcggctattcgtatcaggcaacc
accgatgctcaggggaattttgcgattccccatgtccgtccgggcaattaccatctagcg
gtatacgccaacagcggtacgcagccagggatagtggcagagaaaacgctgtccgtttcc
ggtgataagcaagcgctgcctgtgataacgctgcctaaagccgaaccggttgtgtgggcc
attggacaggccaatcggcaggcgagcgaattccgctttggcaatgaggcacgcaacacc
cgctggcagcaggaggttcccgcaaacctgacgtttgatattggccgcagcgactatcag
cgcgactggtattacgcgcagaccaaaccgggaaaatgggatatccgttttgccctgcaa
ccagagagaaaaacctatttcctgaatatcgcactggcggccgcgagcaacagcggcatg
agcgagccgaccctgccacaactggcggtagcggtgaacggctccacgttggaaacgctg
acgtacgcaaacgacaaaaccatttatcgcggcgcgctacagagtggccgttatcacatt
gcccgcatccctgtgtcatctcgctttctgaaaaacggcaacaacacgatcacgctacaa
ttaaaaggcggcagcgtgatgtatgacgtggtgaccttaagcgaggaataa
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