Pectobacterium aquaticum: DMB82_0004640
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Entry
DMB82_0004640 CDS
T07653
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
paqu
Pectobacterium aquaticum
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paqu03016
]
DMB82_0004640 (truD)
Enzymes [BR:
paqu01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
DMB82_0004640 (truD)
Transfer RNA biogenesis [BR:
paqu03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DMB82_0004640 (truD)
Prokaryotic type
DMB82_0004640 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
UEM40321
LinkDB
All DBs
Position
998096..999142
Genome browser
AA seq
348 aa
AA seq
DB search
MENNEQLVWLHGEPQATGSLKSAAEDFLVVEDLGFQPDGDGEQVLVRVRKRGCNTQFVAE
MLAKFVRLPLRAVSYAGLKDRHAVTEQWFCLHMPGKETPDFSSLALEGCDVLEVIRHRRK
LRIGTLRGNHFTLMLRQVSDRNEVDARLALIAAKGAPNYFGSQRFGRNGNNLEQARLWAN
NEIRVKERSKRSFYLSASRSAMFNQVASARLAGQQAKTVLCGDALQLTGRGSWFVAKPDE
LDALQTRLDAGELQITAPLPGDGELGTQDDAQLFEKQALVGQDALWSLVKRERVEPARRA
VLLYPQQMHWEWQDDATVEVKFWLPAGSFATSVVRELLHSQQDTDLGA
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataacgaacaactcgtctggttgcacggtgaaccacaggctactggctcattg
aaatccgctgcggaagactttctggtggtggaagatctggggtttcagccggatggtgac
ggtgaacaggtattagtgcgtgtgcgcaagcgcggctgcaatacgcaatttgtggccgag
atgctggcgaaatttgttcgtctaccgctacgtgccgttagctatgcgggcctgaaagat
cgtcatgctgtcaccgaacagtggttctgcctgcacatgccgggaaaagagacgcctgat
ttctcctcgctggcgcttgaaggttgtgacgtgctggaggtgattcgccaccgtcgcaag
ctgcggatcggtacgctgcggggtaaccattttacgctgatgctgcgccaggtcagcgac
cgaaacgaggttgacgctcgtttggcgctgattgccgcgaaaggcgcgcctaattatttc
ggcagccagcgtttcgggcgcaacggaaataatcttgagcaggctcgtctttgggcaaat
aacgagattcgggtaaaagaacgcagtaagcggagtttttatctttctgccagccgcagt
gcgatgtttaatcaggttgccagtgcacgactcgcggggcagcaggcaaaaaccgtcttg
tgtggtgatgcattgcaactgacagggcgcggcagttggtttgttgctaagcctgacgaa
ttggatgctttacagacgcgccttgatgcgggtgaactccagattactgcgccacttccc
ggagatggcgaactgggcacgcaggatgacgcgcagctatttgaaaagcaggcgttggtc
ggacaagacgcgctgtggtctttggttaagcgtgagcgggttgaacctgcccggcgtgcg
gtgctgctgtatccgcagcagatgcactgggaatggcaggatgatgcgaccgtggaagtg
aagttttggctacctgcgggcagttttgcgaccagcgtggtacgtgaattgctgcattca
cagcaggataccgatctcggtgcctga
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