Pectobacterium aquaticum: DMB82_0005865
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Entry
DMB82_0005865 CDS
T07653
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
paqu
Pectobacterium aquaticum
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
paqu03009
]
DMB82_0005865 (srmB)
Enzymes [BR:
paqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DMB82_0005865 (srmB)
Ribosome biogenesis [BR:
paqu03009
]
Prokaryotic type
rRNA helicases
DMB82_0005865 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UEM40507
LinkDB
All DBs
Position
complement(1239518..1240843)
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AA seq
441 aa
AA seq
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MTVTNFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLL
PVLQHLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTMLFSATLEGDAIKDFAERLLNEPVEIESDPSRRERKKILQWYYRADDLKHKTALLC
HQLKQPDVTRSIVFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVN
VLVATDIAARGIDINDVSHVFNFDLPRTSDTYLHRIGRTGRAGRKGCAISFVEAHDHLLL
GKISRYLNEPLKPRVIEELRPETKAPSAKTTGKPSKKVLAKRQEKKEKEKEKVKVKVRHR
DAKNIGKRRQPTQKTDEPSAE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccaatttttccgagctcgatcttgatgaaagcctgttagacgccctgcgc
gacatgggctacgagcgcccaaccgtgattcaagctgaggcgatccctccggcgatggaa
ggccgcgacgtcctaggctccgcgccaacaggaacaggtaaaaccgccgcctatctgctg
ccggttttgcagcatcttatcgatttccctcgtaaaaaatcgggtccacctcgtattctg
atcctcacgccaacccgtgaactcgccatgcaggtggccgatcaggcgcgagcgtttgct
gcacatacgcacctggatatcgccacgatcaccggcggcgtggcctacatgaaccacgca
gaagtcttcagtgaaaatcaggatatcgtcgtcgcgacgacgggccgtcttctgcaatac
attaaagaagaaaacttcgattgccgcgcggtagaaacgctgattctggatgaagcagac
agaatgctggatatgggcttcgctcaggatattgaacacatcgctggagaaacccgctgg
cgcaagcaaacgatgctgttttctgcaacgctggaaggggacgcgatcaaagatttcgcc
gagcgcttgctcaacgaacctgttgaaatcgaatccgatccatcgcgtcgggaacgtaaa
aaaattctgcaatggtattaccgcgccgacgatctcaaacacaaaacggcgctgctctgc
caccagttaaaacagccggacgtgacgcgttctatcgtttttgtacgcaagcgtgagcgc
gtgcacgagctggttgcctggttgcgtgaagcgggcattaactcctgctatcttgaaggc
gaaatggtgcaagctaaacgtaatgaggcgatcaaacgtctcagcgacgggcgtgtcaac
gtgctggtagcaacggatatcgcagcgcgtggtattgatattaacgatgtcagccacgta
tttaacttcgatttgccgcgcacatcggacacctatcttcaccgtatcggccgcaccggt
cgcgccggtcgtaaaggctgtgctatctctttcgtcgaagcgcacgaccatctgctgctg
ggaaaaatcagtcgctacttgaatgaaccgctaaaaccgcgcgtcattgaagaactccgc
ccagagacgaaagcgccaagcgccaaaacgacggggaaaccgtcgaaaaaagtactggct
aagagacaagagaaaaaagagaaggaaaaagaaaaagttaaggtaaaagttcgtcatcgc
gatgctaaaaatattggtaagcgtcgtcaaccaacgcagaaaaccgacgaaccctctgcc
gaataa
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