Pectobacterium aquaticum: DMB82_0006995
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Entry
DMB82_0006995 CDS
T07653
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu00040
Pentose and glucuronate interconversions
paqu01100
Metabolic pathways
paqu02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
DMB82_0006995
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DMB82_0006995
Enzymes [BR:
paqu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
DMB82_0006995
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Glyco_hydro_43
DERM
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
UEM40715
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Position
1486473..1488041
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AA seq
522 aa
AA seq
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MFRTVIVTGRLRTCAVAIALSGLVLSGCDNSQQPVEEAAPPDLQVKTAPFGWAAQYHNTD
GKFYATTGGEGAHENSIYVVTSRQELKDALNNIRSPRYIAGDADAELKAKLEPKIIYWQG
TIRGDDLGNGRYANAEDYKTKPNKTTFDFDLYVKAFDQNYMAQLKATADAGGSDAATAST
QLNLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSEAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGDKGNWNARYDSVSINASKNVWIDHCTFTDGDYPD
HLEPVLFGKPIQRHDGLLDIEDGADYLTISYNIFSQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFQGGGA
DETLSIGAYKGSKFKDNGSWFNGNPASNLNQIAVDKCVALQEAEKAAATNSGKAVPAWAL
ETCTNELEWSPPYAYSAGKSIAAVEKYVLENAGAGKLDIALP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaacggttattgtgactggtcgtttacgcacctgtgcggtagctattgccctt
tctgggctcgtgctttccgggtgtgataatagccagcagccagtggaagaagcggctccg
ccagatttgcaggtgaaaacagcaccgtttggctgggctgcgcaatatcataatacggat
ggtaaattttatgcgacgacggggggcgagggcgcgcatgaaaatagcatttatgtcgtc
accagtcgtcaggaattaaaagacgcattaaataatatccgcagcccccgttatatcgcc
ggtgatgccgatgcggaattgaaggcaaaattagaaccaaaaattatctactggcaaggc
actattcgtggtgatgatttaggtaatggacgctatgccaatgctgaggattataaaacc
aaaccgaataaaacaacgtttgattttgatttatacgtcaaagcgttcgatcagaattat
atggcacagttgaaagcgacggcggatgccggtggaagcgatgcagcgacggccagcaca
caacttaacctgttgaaaaaacagaatggccaacgttcgcagtatgccaacaaccagaag
gcgcagattcaatttcaggtaccgccgaataccacgattttaggtgtaggtagcgaagca
aaattggtggaaggctatttatccctcaataccctgagccacacgttcggcaaaacggat
aacagcaacatcattatccgtaatattacgtttcaggcaccgcgtgactttgctccagcc
tgggatgcgggcgacggtgataaaggtaactggaatgcgcgttatgattccgtgtcgatt
aatgccagtaaaaatgtctggatcgatcactgcacgtttacggacggtgactatccagat
catttagagccagtgttatttggcaagcctatccagcgccacgacggcttactggatatc
gaagacggtgctgactacctgacgatttcctacaacattttctcccaacatgacaaaacg
gtattaattggctctggcgatggtgataagggggaataccgaatcacctttgaaggcaat
ttatgggacaacagcgtgcagcgttcgccgcgtgtacgctttggtcaggtgcatttgctc
aataactaccatcgtggggcaacggatacgaattaccccattctgtatgccattggaatg
ggcttcgattcatccattctttccgaaagtaacgtctttaatttccagggcggcggggcg
gatgaaactctgagcatcggtgcctacaagggaagcaaatttaaagacaacggctcctgg
ttcaatggcaatccggcaagcaatttgaatcaaatcgcagtagataaatgtgtcgcattg
caagaagccgagaaggccgcagctacaaactctgggaaagccgtaccggcgtgggcgctg
gaaacctgcaccaatgaactggaatggagcccgccttatgcgtatagcgctgggaaatcc
atcgccgccgttgagaaatacgtcctggagaatgccggcgcggggaaactggatattgct
ctgccgtag
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