Pectobacterium aquaticum: DMB82_0009820
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Entry
DMB82_0009820 CDS
T07653
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
paqu
Pectobacterium aquaticum
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paqu03016
]
DMB82_0009820
Enzymes [BR:
paqu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DMB82_0009820
Transfer RNA biogenesis [BR:
paqu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DMB82_0009820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
UEM41226
LinkDB
All DBs
Position
complement(2108650..2110584)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGFGFLEADGQKSYFIPPPHMKKVMHGDRI
TATLHTEKEREIVEPETLIEPFLTRFVGRIHKKDDRLSITPDHPLLKDAIPCRAARDVTH
DFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGDDPLVPWWVTLSRHNLERSAPEVETT
ERHDSELVRDDLTALSFVTIDSASTEDMDDALYVQDNGDGSLQLTIAIADPTAYVAAGSE
LDNIARQRAFTNYLPGFNIPMLPRPLSDDICSLRPDERRPVLACRVTIAADGALGDDIHF
FAAWIESKAKLAYDNVSDWLENQGEWQPQNDAIAEQIRLLHRLCLARSEWRTTHALVFKD
RPDYRFLLGDKGDVLDIVVEHRRIANRIVEESMIAANVCAAIVLRDKLGFGIYNVHNGFD
PASIEQAVAVLDTHGVQADAQALLTLEGFCTLRRELDAQPTQFLDSRIRRFQSFAEVSTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQAAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDSRFNAEIIDITRGGLRVRLLDNGAVAFIPSSFIHAVRDE
LVCSQEMGTLSVKGEVVYRQGDTLDVVIAEVRLETRSIVAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcacagctaaaacagcaacttcactctcagacaccg
cgtgttgaaggtgtcgtcaaaggcaccgataaaggatttggctttcttgaagctgacgga
caaaaaagctatttcattccccctccgcacatgaaaaaagtgatgcacggtgaccggatt
accgccaccctgcatacggaaaaagagcgggaaattgtcgagccagaaacgctgatcgaa
cccttcctgacccgatttgttgggcgcatccataaaaaagacgaccgcttatccattaca
cctgatcacccgctgctgaaagatgccattccttgccgcgccgcgcgcgatgtcacgcac
gattttcaagaaggcgattgggccgtagccgaaatgcgccgtcacccgttgaagggcgac
cgtggatttcatgctgaactgacgcagtacatcaccacgggtgatgacccgctggtaccg
tggtgggtgacattgtcacgccataatctggagcgctcagccccagaggttgaaacgact
gagcgccatgacagcgaactcgtccgtgacgatctcaccgcgctgagctttgtcactatc
gacagcgccagcactgaagatatggacgatgcgctgtatgtgcaggacaacggtgatggt
tcactgcaattgaccatcgcgattgccgatccgaccgcgtatgtcgctgcgggtagcgag
ttggacaacattgcacgccagcgcgccttcaccaactatctgcccggcttcaacatcccg
atgctgccgcgcccgctgtcggacgacatctgttccctgcgcccggacgagcgtcgccct
gttcttgcctgccgcgtgacgattgccgccgacggtgcgttgggtgacgacattcacttc
tttgccgcctggatcgaatccaaagccaagttagcgtatgacaacgtctctgactggctg
gaaaatcaaggcgaatggcagccgcaaaatgacgcgattgccgaacaaattcgtttgctg
caccgcctctgtctggctcgtagcgaatggcgcaccacccacgcgctggtatttaaagat
cgcccggattaccgcttcctgctgggtgataaaggcgatgtgttggatatcgtggttgaa
catcgccgcatcgctaaccgtatcgttgaagaatccatgattgcggccaacgtctgtgcg
gccattgtgctgcgcgataagctgggtttcggcatctataacgtgcacaacggcttcgat
cctgcgtctattgaacaggcggttgccgtattggatacccacggcgttcaagctgacgcg
caagcgctgttgacgctggagggcttctgcacgttgcgccgcgagctggatgcccaaccg
acgcagttcctggacagccgcattcgccgcttccagtctttcgcagaagtgagcaccacg
ccggggccgcactttggtctggggctggaagcctacgccacctggacatcgccgatccgt
aaatacggcgatatggtgaaccaccgtttgttgaaagcggttatcaccggacaggcagcg
gaaaaaccgcaggacgacgtcacggtccagttggcagaacgccgccgccttaatcgtatg
gctgagcgcgacgtcggcgactggctgtacgcccgctacctcaaagataaagccggtacg
gatagtcgcttcaatgcggaaatcatagacatcacacgcggtggcctgcgcgttcgcctg
ctggacaacggcgcggtggcgtttatcccgtcctcctttatccatgccgtgcgtgatgag
ctggtatgcagtcaggaaatgggcaccctgtcagtgaaaggcgaagtcgtttatcgccaa
ggagatacgctggacgtcgttatcgctgaggttcgtctggaaacccgcagcatcgtggca
aaacctgccgcgtaa
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