Pectobacterium aquaticum: DMB82_0012060
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Entry
DMB82_0012060 CDS
T07653
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03030
DNA replication
paqu03430
Mismatch repair
paqu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DMB82_0012060 (holB)
03430 Mismatch repair
DMB82_0012060 (holB)
03440 Homologous recombination
DMB82_0012060 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paqu03032
]
DMB82_0012060 (holB)
03400 DNA repair and recombination proteins [BR:
paqu03400
]
DMB82_0012060 (holB)
Enzymes [BR:
paqu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DMB82_0012060 (holB)
DNA replication proteins [BR:
paqu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DMB82_0012060 (holB)
DNA repair and recombination proteins [BR:
paqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DMB82_0012060 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
UEM37932
LinkDB
All DBs
Position
complement(2586225..2587235)
Genome browser
AA seq
336 aa
AA seq
DB search
MEWYPWLNASYRQLIGQYQAGRGHHALLLHALPGMGDESLIYALSRWLICQRPDGMKSCG
QCHSCNLMTAGTHPDWHVLSPEKGKQSLGVDPVRDVVEKVYQHSRQGGAKVIWLAAAEQL
TEAAANALLKTLEEPPQNTFFLFGCREPARLLATLRSRCLYHYLDVPSETQSVLWLNARH
RHDSKALRTALRLQSGAPLAAEALLQPERWKQRSALCQAFSAALASRDQLSLIPQLNHDD
ADVRIHWVAALLLDAMKWQQGASEHWVNQDQIELVERLAREPSAHLQYELQQWLACRQKL
LTVTGVNRELLLTERLLDGERTLASSVKRDSHPFSV
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggagtggtatccgtggctgaatgcatcctatcggcagcttatcggccaataccaggcg
ggcagggggcatcatgcgctgttgctgcatgcgctgccgggcatgggcgatgagtcgctg
atttatgcgctgagccgctggctgatctgccagcggcctgatgggatgaaaagctgcggc
cagtgtcactcttgtaacctgatgaccgcaggaacgcacccagattggcatgtgctgagc
ccggagaaaggcaagcaaagcctgggtgtcgatccggtgcgtgacgtcgtggaaaaagtg
tatcaacactcccgacaaggcggagcaaaagtgatctggctggctgccgctgagcaactg
acagaagctgctgcgaacgcactgctgaaaacgctggaagaaccgccgcagaataccttc
tttttatttggttgccgtgaaccagcccggctattggccactttgcgcagccgttgtttg
tatcactatctggatgtccctagtgagacgcagagcgtgctgtggctgaatgctcgccac
cgccatgacagcaaggcattgcgcacggcattgagattgcaatcgggtgcgccgctagcc
gccgaggcgttattgcagccagagcgttggaaacagcgtagcgcgctgtgtcaggcattc
tctgctgcgctggcttcgcgagatcagctctcgttgataccgcagctaaatcatgacgat
gctgatgttcgtattcactgggtggccgcgctactgctggatgccatgaaatggcagcag
ggggcaagtgagcattgggtgaatcaggatcagatcgaattggttgagcgtctggcgcgt
gaaccttccgcacatttgcagtatgaactgcaacagtggctggcttgtcggcaaaaattg
ctgaccgtcacgggtgtgaaccgagaactgctgctgacggaacgcctgcttgatggagag
cgcacgcttgcttcatcggttaagcgcgacagccatcctttttctgtttaa
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