Pectobacterium aquaticum: DMB82_0012130
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Entry
DMB82_0012130 CDS
T07653
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMB82_0012130 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqu03019
]
DMB82_0012130 (rne)
03009 Ribosome biogenesis [BR:
paqu03009
]
DMB82_0012130 (rne)
Enzymes [BR:
paqu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DMB82_0012130 (rne)
Messenger RNA biogenesis [BR:
paqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DMB82_0012130 (rne)
Ribosome biogenesis [BR:
paqu03009
]
Prokaryotic type
rRNA processing factors
DMB82_0012130 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
UEM37946
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All DBs
Position
2598351..2601674
Genome browser
AA seq
1107 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLQLPDGMGLIVRTAGVGKSAEAL
QWDLAFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHISALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDSVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQIASYLLNEKRDAVNAIEKRQGGVRAIIVPHDGMQ
TPHYSVVRVRKGEEKPTLSYLLPQRLETETQQLQDEQTIERKQPEQPALATFSMAEMPEE
TTPPVTKEAPAVAKAAEDAQPGLISRFFSALKGIFASEPIEKTVGAADDKKAEEEKSTEG
QRSERRNPRRQGNNRRDRGSRDNRDNRDNRDNRDNRDDQRRNKRQNDDAIVETRTADNVE
KVGSEEQPRREPRAERQRRRQAPAETKAQPVIDDSDDNAAEQDTPTQVMPRRQRRQLTQK
VRVQSETQQDVLSDNRSPVAEASEQIQAYVKPNDAAVDHSEVDNEQNDSNRANAENGGMP
RRSRRSPRHLRVSGQRRRRYRDERYPSQSPMQLEFAAASPEMSSGKVWVSYPLARPQQAE
RQQQNENVATIETPLLPAVIEAAVTAQADTVESNAVENVAITEAVVQEEVAVTATAQSAD
IIQDSNVVDAKVSTAGEETTIEPVTENTAIDDAIAAVTVNAVEEANTVETQVAEETVVAV
ASEQTVAENVATETVAEEQRADSIADATEKADVSEPISSPAVSAVQETNLPQSVQDEPVT
AISAQPIVEKSVSSVTKAASVAAQPRYKLHATAPMTKAPAPAYRAEPARHSDWVRPDYPF
SGKGSAGGHAAVNQSTAPATKPTPVSE
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgttgccttggttgat
ggtcaacggctgtatgatttggatatcgaaagtccaggtcatgagcagaagaaagcaaat
atctacaaaggtaaaatcacacgtatcgaacctagccttgaagccgcttttgttgattac
ggcgctgaaagacacggtttcctccctcttaaagaaatcgcccgcgaatacttccctagc
aactattcttcccacggtcgtcctaacattaaagacgtgttgcgtgaaggtcaggaagtc
attgttcaggtagacaaagaagagcgaggaaacaaaggtgctgcactgaccacctttatc
agtctggcaggcagttatctggtcttaatgccgaataatcctcgtgcaggcggtatttca
cgtcgtatcgaaggtgacgatcgtaccgagctcaaagaagcgttgggatcgttgcaactg
cccgatggcatggggctcattgttcgtaccgctggtgtgggcaaatccgctgaagcgctg
caatgggatctagctttccgtctgaaacattgggatgcgatcaaaaaagccgccgaaggc
cgccctgcaccgttcctgatccatcaggaaagtaatgtgatcgtccgcgcttttcgtgac
tatctgcgcccagacattggcgaaattctgatcgacaatccaaaagttctcgatctggca
aaagaacatatttctgcactgggtcgccccgatttcagtagcaaaatcaaattgtacagt
ggcgaaattccgcttttcagccactatcaaatcgaatcacagatcgaatcggctttccag
cgtgaagttcgcctgccgtccggtggctctatcgttatcgatacgaccgaagcgctaaca
gcgattgatatcaactccgcccgtgcaacgcgcggtggtgatattgaagaaactgcgttc
aataccaaccttgaagccgcagacgaaattgcccgccagttgcgcttgcgtgacctcggc
ggcctgatcgttatcgacttcatcgatatgacaccagttcgtcaccagcgtgaagttgaa
aaccgcctgcgcgactctgtacgtcaggatcgtgcgcgtattcagatcggccggatttct
cgctttggcttgctagaaatgtcgcgtcagcgcctgagcccttcactgggtgaatccagc
catcacgtttgcccacgctgtagcggcacaggcacgattcgtgataatgaatcactttca
ctgtctattcttcgtctgatcgaagaagaagcgctgaaagagaataccaaagaagtccac
gcgattgttccagttcagattgcatcttatctgctgaacgagaaacgtgatgccgttaac
gccattgagaaacgtcaaggcggcgtgcgcgcgatcatcgtgccacacgatggtatgcag
acaccgcactactccgttgttcgcgtccgtaaaggcgaagaaaaaccgacgctcagctat
ttgctgcctcagcgtttggaaacggaaacgcagcagttgcaagacgaacaaacgatcgag
cgtaaacagcctgaacaaccggctctagcaacatttagtatggctgaaatgccagaggaa
accacgcccccagttactaaagaagctcctgctgtagcgaaagccgcagaggatgctcaa
ccaggcctcattagccgtttcttcagcgcattgaaaggaatcttcgcttccgaacctatt
gaaaaaacagtcggtgctgctgacgataagaaagcggaagaagagaaatctactgagggt
cagcgttctgaacgtcggaacccacgccgtcagggtaataatcgccgtgaccgtggctct
cgtgacaatcgtgacaatcgtgacaatcgtgacaatcgtgacaatcgtgatgatcagcgt
cggaataagcgacaaaacgacgacgcgattgttgaaacccgtactgcggataatgtggag
aaagtcggttcggaagaacaaccgcgccgtgaaccacgtgccgaacgtcagcgtcgtcgg
caggctccggctgagacaaaagcacagccagtcattgatgattctgatgacaacgcagcc
gagcaggatacaccgactcaggttatgccacgccgtcaacgccgtcagttgacgcagaaa
gtacgtgtccagtctgaaactcagcaggatgtcctctctgataacagatcgcctgttgct
gaagcatccgagcagattcaagcttacgtcaagccaaacgacgctgcggtagaccatagt
gaggtcgataacgagcagaacgattcaaatcgtgccaatgccgagaatggcggtatgccg
cgtcgatcgcgtcgttctccgcgtcacctgcgcgtcagcggccagcgccgtcgccgctat
cgtgatgagcgttatccgtctcagtcaccaatgcagttggaatttgctgccgcatcaccg
gaaatgtcatcaggaaaagtgtgggttagctatcctctggcacggccacagcaggctgaa
cgccagcagcagaacgagaatgttgcaacaattgaaactccgctgttaccagccgttatc
gaagccgccgtgactgcacaagcagacacagtggaatccaatgcggttgaaaacgttgct
atcactgaagccgtggttcaggaagaagtcgctgtaaccgcaacagcacagtctgccgac
atcatccaggatagcaatgtagtggatgccaaggtgagtaccgcaggcgaagaaaccacc
atcgagccagtgactgagaacaccgccatcgacgatgctatcgctgcagttaccgtgaat
gccgttgaagaagcaaatactgtggagactcaggtcgctgaagaaaccgttgtcgcagtt
gcttctgaacaaacagtggctgaaaacgtagcgaccgaaacggtcgcagaagagcaacgg
gcagatagcatcgctgatgcaactgagaaagcagatgtgtcagaaccaatttcttcccct
gcggtttccgcagtacaggaaaccaacctgccacaaagcgttcaggatgagccggtaacc
gctatcagcgcacaaccgattgtggaaaagtctgtatcgagcgtaacaaaagcagcaagc
gttgctgcacaacctcgttataagctccacgcgacagcgcctatgacaaaagcgccagcc
ccagcctaccgtgcagagcctgctcgacatagtgattgggtacgtccagactacccgttc
tcagggaaaggctcagcaggcggccatgccgcagttaaccagtcaactgcgccagcaacc
aagcctacgccagttagcgagtaa
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