Pectobacterium aquaticum: DMB82_0012650
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Entry
DMB82_0012650 CDS
T07653
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMB82_0012650 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqu03019
]
DMB82_0012650 (rhlE)
Enzymes [BR:
paqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DMB82_0012650 (rhlE)
Messenger RNA biogenesis [BR:
paqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DMB82_0012650 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UEM38040
LinkDB
All DBs
Position
complement(2698027..2699460)
Genome browser
AA seq
477 aa
AA seq
DB search
MSFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINPQ
MMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLP
AKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQ
LIGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRV
LVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLR
DIERLLKREIPRIAIEGYEPDPSIKAEPIVNGRQGNRGGGARNASPRAQSGAPRGQSERS
QGQGERRPADGNRQPRKAGGNSDSPWGTGGKGNSGKGSGEGQRRAPRPQNRSKPADK
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctgagtgccgatattctgcgcgcgattgacgagcagggt
tatcgcgatcctactcccgttcagcggcaggcgattcctgtcgtgctggaagggcgcgat
ttaatggccagcgcgcaaactggtacaggcaaaacggcgggctttacgctgccgttatta
caattgctgaccagccgtgaagcgcagcacaaagggaaaggccgccgtccggtacgcgcg
ctgatcctcacgccaacccgtgaactggccgcgcagattgatgaaaatgtgaaggcgtat
agcaagtatctgagcctgcgttcactggtcgtattcggtggggtgagcattaacccacag
atgatgaaactgcgcggcggcgtagatattctggtggcaacgccaggacgtctgctcgat
ctggagcatcagcgcgccgttgacctgtcacagattgagattctggtgctggatgaagcg
gaccgtatgctggatatgggcttcattcacgatattcgccgtgtactggcgaagctgcct
gctaaacgccaaaatctactgttctcagcgaccttctctgatgagatcaaagcgctggcg
aacaagctactgactaatcccgcctcggttgaagtcgtgcgtcgtaatacgccgtctgaa
ctggttacacagcacgtgcattttgttgataagcgtcgcaagcgtgaactgctgtcgcaa
ctgattggtgaaaataactggcagcaggtgctggtctttacccgcaccaaacacggcgct
aaccatttggctgagctgctggaaaaagacggcattactgccgctgctatccacggtaac
aaaagccagggcgcgcgtacgcgtgcgctggcaaactttaaagacggcagcattcgcgtg
ctggtcgcaacggatatcgccgcgcgtggtctggatatcgaccaactacctcacgttgtg
aactatgagctgccaaacgtgccggaagattacgttcaccgtatcggtcgtaccggtcgt
gcggaagcgacgggtgaagcgctgtcgctggtctgtgtggatgagcacaaactgctgcgc
gacatagagcgtctgttgaagcgtgagattccacgtatcgctatcgaaggctacgagccg
gatccgtccatcaaagcagaaccgattgtgaatggtcgtcagggcaatcgtggcggcggc
gcgcgtaacgcgtctcctcgcgcacagtctggcgcgccacgcggtcagtctgagcgcagt
caaggtcagggtgaacgccgtccggccgatggcaatcgccagccgcgtaaagcgggcggt
aatagcgatagcccgtggggtactggtggaaaaggcaatagcgggaaaggcagtggcgaa
ggccaacgccgcgcaccgcgtccgcaaaaccgcagtaagccagcggacaagtaa
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