Pectobacterium aquaticum: DMB82_0015665
Help
Entry
DMB82_0015665 CDS
T07653
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03030
DNA replication
paqu03430
Mismatch repair
paqu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DMB82_0015665 (dnaE)
03430 Mismatch repair
DMB82_0015665 (dnaE)
03440 Homologous recombination
DMB82_0015665 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paqu03032
]
DMB82_0015665 (dnaE)
03400 DNA repair and recombination proteins [BR:
paqu03400
]
DMB82_0015665 (dnaE)
Enzymes [BR:
paqu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DMB82_0015665 (dnaE)
DNA replication proteins [BR:
paqu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DMB82_0015665 (dnaE)
DNA repair and recombination proteins [BR:
paqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DMB82_0015665 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UEM38578
LinkDB
All DBs
Position
complement(3360266..3363748)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGA
GIKPIIGADFCVESDELGDELAHLTVLAMNNAGYQNLTLLISHAYQRGYGAAGPTIDRDW
LIEHQEGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEHFPQRYYLELIRTSRPDEES
YLHAAVELATKHGVPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDPKRPRHYSPQQYM
RSEEEMCELFADIPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVQCSKKGL
EERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDKVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDSEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALRMINARRAKQGQEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSSVPPWPEQVVLDGERETLGLY
LTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLAARVMVTKRGNRIGVCTLD
DRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSGGLKMTVRELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARARLRFGAAWRVTPAD
ALLNELRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccacgttttgttcacctgcgtgttcatagtgactattccatgatcgatggg
ctggccaaagtcggtccgctggtaaaaaaagcggcagcactcggcatgccagcgctggcg
attaccgattttaccaacctgtgtgggctggttaaattctatggcggcgcgcatggtgcg
ggaatcaagcccattatcggcgcagatttctgtgtcgaaagcgacgaattgggtgatgag
ctcgcgcatcttaccgttctggcgatgaataatgctggctaccagaatcttacgctgctg
atttcccatgcttatcaacgaggctatggcgctgctgggccgacgattgaccgagattgg
ctgattgagcatcaggaagggctgattttactgtctggcggccgccgaggtgatgttggc
cgatttttgctgcgcggtaaccagacgcaggccgaacagtgtctggccttctatcaggaa
cacttcccccagcgttactatctggaactgatccgcacgtcccgccccgatgaagaaagc
tatttgcacgcagccgtcgagctggcgacgaagcacggggtgcccgtggtggcgaccaat
gaagtgtgctttatcagcaccgatgattttgacgctcacgaaattcgcgtagcgattcac
gacggttacacgcttgacgatcccaaacgtccacgtcattacagcccgcagcagtacatg
cgctccgaagaggaaatgtgcgagctgtttgcggatatccccgaagcgctggcgaacagc
gttgaaattgccaagcgttgtaacgtaacaattcgtctgggtgagtatttcctgccgcag
ttcccgacgggcgacatgagcacggaagattttctggttcagtgctcgaaaaaggggctg
gaggaacgtctcgaattcctgttccccgatccggaagtgcgtgctgagcgtcggcctgaa
tatgatgagcgtctggatattgaactgggcgtcatcaaccagatgggatttcccggctac
ttcctgatcgtcatggagtttattcagtggtcgaaggataacgatgtgcctgttgggccg
ggacgtggttccggtgcggggtcgttagtcgcctacgcgctgaaaatcaccgatctggat
ccgcttgaattcgatctactgttcgaacgtttcctcaaccctgaacgtgtctccatgcct
gacttcgacgtcgatttctgtatggaaaaacgcgataaggtcatcgatcacgtcgcggaa
atgtacggacgtgatgcggtatcgcagattatcaccttcggtacgatggcggcgaaagcg
gtgattcgtgacgtcgggcgcgtgcttggacacccttatgggtttgtcgatcgcatttca
aagctggtgccgcccgatccgggtatgacgctggaaaaagcgtttgctgctgaaccgcag
ctgccagaaatttatgaggccgatgaagaagttagggccctcatcgatatggcgcgcaag
ctcgaaggggtaacgcgtaacgcgggtaaacatgcgggtggggtggtgatatcccccacc
aagattaccgattttgcaccgctgtactgtgattccgaaggaaaccatccggttacccag
tttgataagaacgacgtcgaatatgctgggctggtgaagttcgacttccttggcctgcgt
acgctgaccatcatcgactgggcgctgaggatgattaacgcccgtcgcgcgaagcaaggg
caggagccgattgatattgcggcgatcccgctcgacgataagaaaagcttcgacatgctg
caacgctcggaaaccacggcggtattccagcttgaatcgcgcggcatgaaagacctaatc
aaacgccttaagcccgactgtttcgaagatatgatcgcactggtggcgctgttccgccct
ggcccattgcaatccggcatggtagataacttcatcgaccgtaagcacggtcgtgaagcg
atctcgtatcctgatatcgaatggcagcacgagtcacttaagcctgtgctggagccgacc
tacggcattatcctgtatcaggaacaggtcatgcagattgcgcaggttctggcaggctat
acgctgggcggcgcggatatgctgcgtcgtgcgatggggaaaaagaacccggtcgaaatg
gcgaagcagcgtggtggcttcgaagatggtgccaaatctcgcggcgtgaacggcgaattg
gcggttaagatttttgacctggtggaaaaattcgccggttatggctttaataaatctcac
tccgcggcctatgcgctggtgtcttaccaaacgctatggctgaaggcgcactatccggca
gaattcatggcggccgtaatgacggccgatatggacaacacggataaagtggtcggcctg
gttgatgaatgctggcggatggggttaaaaatcctgcctccggacatcaacagcgggctg
tatcacttccacgttaatgacgatggcgagattgtttacggcatcggcgcgattaaaggc
gtgggggaaggcccgattgaggcgattatcgaggcgcgtaatcagggcggctattttaga
gagctgtttgatctctgcgcgcgtaccgacattaaaaagctgaaccgccgcgtgctggaa
aagttgattatgtctggggcattcgaccgtctggggccacatcgcgccgcgctgatgaat
tcattgcctgatgcgctgaaggccgccgatcagcatgcgaaagcggaagccattggtcag
gtggatatgttcggtgtgctggccgacgcgcctgaacaggttgagcaatcctacagttcg
gtgccgccgtggccggagcaggtggtgctggatggtgaacgggaaacgttggggctgtat
ctgaccggccacccgatcacgcaatatattaaggaaattgaacgctatgccggtggcgtg
cgtttgaaagatatgcacccgacggatcggggtaaaatgaccactgctgttgggctggtg
ttggcggctcgcgtcatggtaaccaagcggggtaaccgtattggtgtctgtacattggac
gatcgttccggtcggcttgagatcatgctgtttaccgatgcattggaaaaatatcagcat
ttacttgagaaagaccgtatccttatcgccagtggacaggtcagctttgatgacttcagc
ggcgggcttaaaatgaccgtccgagagttaatggatatcagtgaagcgcgggaaaaatac
gcgcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagctattaaaccgt
ctccgccaatcgttggaaccccatcgatcggggacgatcccagtgcatctctattaccag
cgtgaagatgcgcgtgcccgactacgtttcggcgcagcatggcgtgtaacgcctgccgat
gcgctactgaacgagctgcgcacattagtgggtaatgagcaggtggaactggaatttgac
taa
DBGET
integrated database retrieval system
