Pectobacterium aquaticum: DMB82_0015870
Help
Entry
DMB82_0015870 CDS
T07653
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DMB82_0015870 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paqu03400
]
DMB82_0015870 (recD)
Enzymes [BR:
paqu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DMB82_0015870 (recD)
DNA repair and recombination proteins [BR:
paqu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DMB82_0015870 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
NAT10_TcmA_helicase
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
Herpes_Helicase
PhoH
MukB
DEAD
AAA_28
UvrD_C
CbiA
T2SSE
Bcl-2
FtsK_SpoIIIE
AAA_17
DUF87
AAA
SRP54
Flavi_DEAD
TrwB_AAD_bind
ResIII
ATPase
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
UEM38615
LinkDB
All DBs
Position
complement(3404580..3406463)
Genome browser
AA seq
627 aa
AA seq
DB search
MIALLETALARRLLRPLDVQFARMLADETQPDLLLAAACLSAHSGAGHVCLPLENLQAQT
LFDGREPELAQHLLAETGLSTVAAWQQRLLASDAVSDGSKPTPLVLQGEKLYLQRSWQSE
GRVAQFIASERDTIPVDEPAIRAVLDRLFPDTDEEINWQKVAAAVALTRRIAVISGGPGT
GKTTTVAKLLAALIELNTGETLRIQLAAPTGKAAARLTESLGQALHRLAVDPRLREAFPQ
EATTLHRLLGAVTDSHRLRHHQDNPLHLDVLIVDEASMVDLPMMANVIAALPPHARIIFL
GDRDQLASVEAGAVLGDICRFAEAGYSHARAQQLQRLTGCKLDERGPEGQTTVGDSICLL
RRSYRFDPHSGIGQLALAVNGGDDARVRAVLNGEFADITCSPLTAAEEYQAMLAQCVEGY
RDYLQLVAAGATPDAVLLAFQRYRQLCALREGPFGVAGLNQRIEQALHQAGLIQRSRNPL
NRWYPGRPVMIERNDAALGLFNGDIGIAMIGESGELRVFFPLPNGETKDVTPSRLPPHDT
AYAMTVHKSQGSEFDHTALVLPNHYLPVLTRELVYTAITRARQRLSLYTDVRILCRAVKT
PTQRYSGLEERISALMVRSSASKMPFS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgattgcgttacttgaaacggcactggcgcggcggttgctgcgcccgctggatgttcag
ttcgccagaatgctggcggatgagacgcagcccgatctgctgttggctgccgcctgcctg
agtgcgcactcgggggcggggcatgtgtgtttaccgctggagaacttgcaggcgcagacg
ctgtttgacggccgcgagcctgaactggcgcaacatctacttgcggagacaggactaagc
acagttgccgcatggcagcagcgtttactggcgtccgatgccgtcagcgacggcagcaag
ccgacgccgctggtgctgcaaggagaaaagctgtatttacagcgcagctggcagagtgaa
ggccgcgtggcgcagtttatcgccagcgagcgcgatacgatccccgtcgatgaacctgca
attcgggcggttttggatcggctgtttcctgacacggacgaagagattaactggcagaag
gtggccgcggctgtcgccttgacgcgccgcattgcggtgatttccggcgggccgggaacg
gggaaaaccacgacggtggctaagttgttagcggcgttgattgagctgaatacgggagag
acgttacgtattcaactggctgcgccgactgggaaagcggctgcgcggctcacggagtcg
ctggggcaggccctgcaccgtctggcggtggatcctcggttacgggaagcgtttccgcag
gaagcgacaacgctgcatcgtcttttgggggcggtgacggacagccatcgtctgcgtcac
catcaggacaacccgctgcatttggatgtgctgattgtggatgaggcgtcgatggtcgat
ctgccgatgatggcgaatgtgatcgccgcgcttccaccacacgccagaattatctttctg
ggcgaccgcgatcaactggcgtccgtcgaggcgggcgcggtgttaggtgacatctgtcgt
tttgccgaagctggctatagccatgcgcgggcgcagcaattgcagcggctgacgggttgt
aagctggatgaacgtggtcctgaaggacagacgacggttggtgacagtatctgtctgtta
cgccggagctaccgtttcgatccgcattccggtattggccaactggcgctggcggtgaac
ggcggtgatgacgctcgtgtgcgtgctgtgttaaacggcgagtttgccgatattacctgt
agcccgttaaccgcggctgaagagtatcaggccatgctggcacagtgtgtcgaagggtat
cgtgattatctacagcttgtggcggcgggagccacgccggacgctgttctgcttgctttc
cagcgctatcgccagctgtgcgcgttgcgtgaagggccgtttggcgttgcagggctgaat
cagcgcatcgagcaggctttgcatcaggctgggctgattcaacgcagtcgtaatccgctt
aaccgctggtatcccggccgaccggtcatgattgaacgtaacgatgccgcattgggtctg
ttcaatggtgacatcggtatcgccatgataggggaaagcggggagctgcgcgtatttttc
cccttgccgaatggcgaaaccaaagacgttacgccaagccgtctgccgccgcatgacacg
gcctatgcgatgacggtgcataaatcgcagggatcggagttcgatcatacggcgctggtg
ctgccgaaccactatttaccggtgctgacgcgggaactggtgtataccgccatcacgcgt
gcacgccagcgtttgtcactttataccgatgtccgtattctctgccgagcggtgaaaacg
ccaacgcagcgctatagcggcttggaagagagaattagcgcattaatggtgcgctcttct
gctagtaagatgccattcagttag
DBGET
integrated database retrieval system
