Pectobacterium aquaticum: DMB82_0015875
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Entry
DMB82_0015875 CDS
T07653
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DMB82_0015875 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paqu03400
]
DMB82_0015875 (recB)
Enzymes [BR:
paqu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DMB82_0015875 (recB)
DNA repair and recombination proteins [BR:
paqu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DMB82_0015875 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
UEM38616
LinkDB
All DBs
Position
complement(3406460..3410041)
Genome browser
AA seq
1193 aa
AA seq
DB search
MKNAAPQSLDVMTLPLLGERLIEASAGTGKTYTLAALYLRLLLGLGKQAAYPRPLLVEEI
LVVTFTEAATEELRERIRARIHALRIACLRKSAQGEEAEKPKDASLAQLLAEISDHRDAA
DVLLAAERQMDEAAIYTIHGFCQRMLSTNAFESGVLFEQVLIEDEQPLRRQACADFWRRY
CYPLPVEVARIIGLEWKGPENLLADLAPYLHGEPPAFRLPPQEDETLLSRHEKIVATIDA
YKQRWLASAVDLESLIVASGVDKRSYSSKHLPNWLQKVMLWAEQPTLDYQLPKDLVRFAQ
QTLIEKTKKGEPPVHALFEETERLLEAPLSLRDLVIVRALSAIRDSVREEKRQRAELGFD
DLLSRLDVALQQPGGEQLASAIRERYPVAMIDEFQDTDPQQYRIFRTLYVGQSQCGLLLI
GDPKQAIYAFRGADIFTYMHARGEVAAHYTLGTNWRSSHQMVRGVNRLFERLENPFIFQN
IPFLPVKPAESKRGLVFEVAGQPQPALQFWLTGSEPIGIGDYQQRMARQCAAQIRDWLAA
SQRSEAWLITDDSRRLVRASDMSVLVRSRREASLIRDALSRLSIPSVYLSNRDSVFSTPE
ASDMLWLLQAVLAPEQERTLRSAMATALMGLDAEQVDALGQSEAAWDALVDEFAGYRALW
RQRGVLPMLRALMSQHQLAENLLASAEGERRITDILHIGELLQDASATLDSEHALVRWLS
QQIVQPNPQAENQQLRLESDRHLVQIVTIHKSKGLEYPLVWLPFISNFRVQDQGIYHDRE
NYHAVLDLQNNEESQALAEEERLAEDLRLLYVALTRSIYHCSVGVAPVQRSRKKDGSSDM
HQSALGYLLQRGKEAEAATLVSELEGMVGDGVALTPLQATEEQRWQPDRPELAELRARHI
ERQLRDGWRVTSYSGLQQQGSASAQDLVPRLDIEAIGERQEADETQLTPHTFPRGASPGT
FLHSLFETLDFTQPVEDDWLAEQLQLQGFEAHWNPVLKAWMDTLLHTPLNEQGIALSALD
NADKQAELQFYIPIDAPIQAAQLDRLAKHHDPLSARCPALSFQQVKGMLKGFIDLVFRWE
GRYYLLDYKSNWLGPDASAYTQTAMMQSMAEHRYDLQYQLYTLALHRYLRHRIADYDYER
HFGGVFYLFLRGVEASHPGNGIFACRPSTEFVFGLDALFKGKTLDDADTGIPS
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatgccgcgccgcaatcattagacgttatgacgttgccgctcctcggagagcgg
ctgattgaggcgtcggccggaacggggaaaacctatacgctggctgcgctttacctgcgc
ctgctattggggctggggaagcaagccgcgtatccacgtccactactggtcgaggaaatt
ctggttgtgacctttacggaggctgcgaccgaagaattgcgggagcgtattcgtgccaga
attcacgcgttgcgcatcgcctgcctgcgtaaaagcgcgcagggtgaagaagcagagaag
cctaaggatgcttcgctagcgcaactgctggcggagatttcggaccaccgcgatgcggcc
gacgtattgctggcggctgaacgccaaatggacgaagcggcgatctacacgatccacggc
ttctgccagcgtatgctcagtaccaatgcgtttgaatccggcgtgcttttcgaacaggtg
ctgatagaagatgaacagccgctgcgccgtcaggcctgcgctgatttctggcgtcgttat
tgctacccgctgccagtcgaggtcgcacgcattatcggtctggagtggaaagggccggaa
aacctgctggccgatctggcgccttatctgcacggtgaaccccctgcgtttcgcttgccg
ccacaagaagatgaaacgctactgagtcgacatgagaagatcgtagcgacgatcgatgca
tacaaacaacgctggctggcgtcagccgtggatctggaatcgctgatcgtggcttctggc
gttgataaacgcagctacagtagtaagcatcttcccaactggctacagaaagttatgctg
tgggcagagcagccgacgctggattatcaactgccgaaagatctggtgagatttgcccag
caaacgctaatcgagaaaacgaagaaaggcgagccgcctgttcatgccctctttgaggag
accgaacggctacttgaagcgccgctgtcgctgcgtgatttagtcattgtccgtgcgctg
tcggcgatccgggattcagtgcgtgaggaaaaacgacagcgtgcagaactgggatttgac
gatctgctgagccgtctggatgttgcgttgcagcagccgggtggggaacagcttgccagc
gccattcgcgaacgctatccggtggcgatgatcgatgagtttcaggataccgacccccaa
cagtaccgtattttccgaacgctgtacgtcgggcagtcgcagtgtgggctgctgctgatc
ggtgaccctaagcaggctatttatgcgtttcgcggtgcggatatttttacctatatgcac
gcacgcggagaagtggccgcacactatacgctgggcacgaactggcgctcgtcgcaccag
atggtacgcggcgttaaccgcttgtttgaacgtctggagaatccttttattttccaaaat
atcccttttctgccagtcaagccggctgaatctaagcgcggtttggtgtttgaggttgcg
ggacagccgcagcctgcgctgcaattctggctaacgggttcggaaccgattggcatagga
gattatcagcagcggatggcgcgccagtgtgcggcgcagattcgtgattggctggcggcc
agccagcgtagcgaagcttggctgatcaccgacgattctcgccgtttggtcagggcatct
gacatgagcgtgctggtgcgtagccgacgtgaagcctcgctgattcgtgacgcgctgagc
cgtttatccattccctcggtgtatctgtccaatcgagacagcgtattcagtacgccagaa
gccagcgatatgttgtggctgttgcaggcggtgctggcacccgagcaagagcgcacgtta
cgcagcgccatggcgacggccttgatggggttggatgccgaacaggttgatgccttaggg
caaagcgaagccgcatgggatgcgctggtggatgaatttgcgggctaccgtgctctgtgg
cgtcagcgcggcgtgctgccgatgttgcgggcgttgatgagtcaacatcaactggcggag
aacctgctggcgagtgctgagggcgaacgccggattaccgatattttgcacatcggtgaa
ttgttgcaggatgcctccgcaacgcttgatagcgaacatgcgctggtgcgctggctatca
cagcagatcgtccaacctaatccgcaggcagagaaccagcagctacgtttggaaagcgat
cgtcacctggtgcagatcgtgacgatccacaaatcgaaagggctcgagtatccgctggtg
tggctgcctttcatcagtaacttccgcgtgcaggatcagggaatttatcacgatcgagag
aactatcatgccgtgttggatctgcaaaataatgaagaaagccaggcgctagcggaagaa
gagcggctggcggaagatttgcgtttgctgtatgtcgcgctgacccgttctatctaccac
tgtagcgtgggcgtcgcgccggttcagcggtcgcgtaagaaagacggcagcagcgatatg
caccagagcgcgctgggctatttactccaacggggtaaagaagccgaggctgccacgtta
gtcagcgagctggaaggcatggttggcgatggtgtcgcattaacaccgctacaggcaacg
gaagaacagcgctggcagccggatagaccagaattggcagagttgcgggctcgtcacatt
gaacgccaactgcgcgacggctggcgagtaaccagctattcggggcttcagcagcagggt
tctgcaagcgcacaggatctggtgccgcgtctggatatcgaagcgataggtgagcgtcaa
gaagcggatgaaacccaactgacaccgcatacgttcccgcgcggtgcgagtccgggaacg
tttttgcatagcctgtttgaaacgctggattttactcagcccgttgaggatgactggcta
gctgagcaactgcagctacagggatttgaagcgcattggaacccagtgttaaaggcgtgg
atggatacgcttttgcatacgccgcttaatgagcaagggatcgcgctatcggcgctggat
aacgccgataagcaggccgaattacagttctatataccgattgatgcgccaatacaggcg
gcgcagctcgatcggttggcaaagcatcacgatccgctatccgcgcggtgtccagcgctc
tcttttcagcaggtgaaaggcatgctgaaagggtttatcgatctggtgttccgctgggaa
gggcgctattacctgctggactataagtccaactggctcggccctgatgccagcgcgtac
acccaaacggccatgatgcagtcgatggctgaacaccgctacgacttgcaatatcagctc
tacacgttggctttgcaccgctatctgcgtcatcgcattgcggattatgactatgagcgc
cattttggtggggttttttatctgtttttacgcggcgttgaagcgtcgcatcccggcaat
ggcatttttgcttgtcgtccctctactgaatttgttttcgggctggatgcgctcttcaag
ggaaagacgcttgacgatgctgatacaggaattccctcatga
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integrated database retrieval system
