Pectobacterium aquaticum: DMB82_0016780
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Entry
DMB82_0016780 CDS
T07653
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DMB82_0016780 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paqu03400
]
DMB82_0016780 (uvrA)
DNA repair and recombination proteins [BR:
paqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DMB82_0016780 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DMB82_0016780 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_23
nSTAND3
AAA_25
NACHT
cobW
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
UEM38776
LinkDB
All DBs
Position
complement(3599905..3602739)
Genome browser
AA seq
944 aa
AA seq
DB search
MDKIEVRGARTHNLKNINLIIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PEHDVPLDAQTVSQMVDNVLAQPEGKRLMLLAPIVKDRKGEHSKTLENLASQGYIRARID
GEVCDLSDPPTLELQKKHTIEVVVDRFKVRDDLAQRLAESFETALDLSGGSIVVADMDDP
TQPELLFSANFACPVCGYSMHELEPRMFSFNNPAGACPSCDGLGVQQFFDPSRVVQNAEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDVDAPFESLSAAVQKVILYGSGKENVEFKY
INDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISNRSCASCGGTRLREEARN
VFVEQTTLPQISDMSIGHAMTFFQNMKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGQIVAEGTMEEIMAVPDSLTGQFLSGKRKIEI
PQQRVPADPTKVLKLIGAKGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPLAQR
QLNGATLAEPAAHREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE
ARTRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIQY
KGKGIHEVLDMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKL
SRELSKRGTGQTLYILDEPTTGLHFADIQQLLTVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLRPILAREA
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggataagatcgaagttcgtggtgctcgtacccataatctcaagaatatcaacctgata
atccctcgtgacaagctgatcgtaatcaccggtttgtcggggtcgggtaagtcatcgctg
gcgtttgacacgctgtatgccgaagggcagcggcgctatgtggaatccctctccgcctat
gcccgtcagtttttgtcgctgatggaaaaaccggacgtcgatcatatcgaagggctgtcg
cccgccatctctatcgaacagaaatccacctcgcacaacccgcgttctacggtcgggacg
attaccgaaattcatgattatctgcgcctgctgtttgctcgcgtgggtgagccgcgttgc
ccggagcacgatgtgccgctggatgcacaaacggtcagccagatggtggacaacgtgctg
gcacagccggaaggcaaacgcctgatgctgctggcaccgattgtgaaagatcgcaaaggc
gaacacagtaagacgctggaaaatctggcgtcgcagggctatatccgcgcccgtatcgac
ggtgaagtgtgcgatctgtccgatccgccgacgctggaattacagaaaaagcacaccatt
gaagtcgtcgtcgatcgctttaaagtgcgtgacgatctggcacagcggctggcggagtca
ttcgaaaccgcgctggatctgtccggtggtagcatcgttgttgccgatatggacgaccca
acccagcctgaactgttgttctcggcgaactttgcctgtccggtgtgtggctacagcatg
catgagctggaaccgcgtatgttctcgttcaacaacccagcgggtgcctgcccaagctgt
gatggtctgggcgtgcagcagttcttcgatccgtcccgcgtggtgcaaaatgccgagctg
tcgctggctggcggcgcgattcgcggctgggaccgtcgcaacttctactattttcaaatg
ctgcgctcattggcggagcactacaaatttgacgtcgatgccccgtttgaaagtctgagc
gctgcggtgcagaaagttattctttacggctccggtaaagagaacgtcgaattcaaatat
atcaacgatcgcggcgacacctccgtgcgtcgtcacccgtttgaaggcgtgctgcacaac
atggagcgccgttataaagagacggaatccacggcggtgcgcgaagagctggcaaaattc
atcagcaaccgttcctgcgccagctgcggcggaacgcgcctgcgtgaagaagcgcgtaac
gtgttcgtcgagcagacgacgctgccgcagatttccgatatgagcatcggccatgcgatg
acgttcttccagaatatgaagctcagtgggcaacgcgcccaaatcgccgagaaagtgctg
aaagagattggcgatcgactcaaatttttggtgaatgtcgggctgaactatttgtcgctc
tcccgttcggcggaaacgctgtccggcggcgaggcgcagcgcattcgtctggcaagccag
atcggtgctggcctggttggcgtgatgtacgtgctggatgagccatctatcggcttgcac
cagcgtgacaacgagcgcctgctggaaaccctgattcacctgcgcaatctgggcaatacc
gtcattgtggttgagcatgatgaagacgcaattcgcgccgccgaccatgtgattgatatc
ggccccggcgcgggcgtgcacggcgggcagattgtcgcagaaggcacgatggaagagatc
atggcggtgccagattcgctgacggggcagttcctcagcggtaaacgcaagattgaaatc
ccgcagcagcgcgtgcctgcggatccgaccaaagtgctgaagctgattggcgcgaagggt
aacaacctgaaagacgtcacgctgacgctgccggttgggctgtttacctgcatcactggg
gtatcaggatcgggtaaatcgacccttatcaacgataccttgttcccactggcgcagcgc
caactgaacggtgccacgctggcagagcctgccgcgcaccgcgagattcagggactggag
catttcgacaaggtgatcgatatcgatcaaagcccgattggccgtacgccgcgctccaat
ccggcaacctacaccggtattttcacgccgattcgtgaactgtttgctggcgtgccggaa
gcccgtacccgtggctataatcctggccgtttcagttttaacgtgcgcggtgggcgctgt
gaagcctgtcagggcgacggcgtgattaaggtcgaaatgcacttcctgccggatgtctat
gtgccgtgtgaccagtgcaaaggcaagcgctataaccgcgaaacgttggagattcaatac
aaaggcaaaggcatccatgaagtgctggatatgaccatcgaagaggcgcgagagttcttt
gatgccattccggcgctggcgcggaaactgcaaacgctgattgacgtcggtctgtcctac
attcgtcttgggcagtcagccaccacgctgtccggcggggaagcgcagcgtgtaaaactg
tctcgcgagctgtcgaaacgcggcaccgggcagacgctgtatattctcgacgaacctaca
accggcctgcactttgccgatattcagcagcttcttaccgttctgcatcagttgcgcgat
cagggcaataccatcgtggtgattgaacacaatctggatgtgattaaaacggcagactgg
attgtcgatttagggccagaaggcggcagcggcggcggagaaattctggtctccggcacg
ccggaaacggtggcagagtgcgaagcgtctcacactgcgcgtttcctgcgaccgattctg
gcgcgtgaagcctga
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