Pectobacterium aquaticum: DMB82_0017340
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Entry
DMB82_0017340 CDS
T07653
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
paqu
Pectobacterium aquaticum
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paqu03021
]
DMB82_0017340 (rapA)
Transcription machinery [BR:
paqu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
DMB82_0017340 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
Motif
Other DBs
NCBI-ProteinID:
UEM38881
LinkDB
All DBs
Position
3733278..3736181
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AA seq
967 aa
AA seq
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MPFTLGQRWISDTESELGLGTVVAVDTRMITLLFPASGENRLYSRSDAPITRVMFNPGDT
VTSHEGWQLKVDDVREEKGLLVYCGQRLDDETSAELREVFLDSKLTFNKPQDRLFAGQID
RMDRFALRYRARKHQNEQARQQWGGLRGMRASLIPHQLHIAHEVGQRHAPRVLLADEVGL
GKTIEAGMIIHQQLLAGRASRVLIVVPETLQHQWLVEMLRRFNLLFSLFDDERYAEAKLD
SSNPFETEQLVICSLGFVQRSAQRFAQLVNADWDLLVVDEAHHLVWSEESPSPEYQAIET
LARATPAVLLLTATPEQLGQQSHFARLRLLDPNRFHDYQEFVAEQQQYRPVADAVTLLLA
GEKAKTAELNALSDLLGEQDIEPLLKAINSDSDDNQKARQELITMLMDRHGTSRVLFRNT
RQGVKGFPQRVLHQIRLPLPAQYQTAIKVSGIMNANKALEVRARDMLYPEQIYQQLEGDD
ATWWNFDPRVEWLLNYLTAHRDEKILVICAQAATALQLEQVLRTREAIRAAVFHEGLSIL
ERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGRLDRIG
QAKEIQIMVPYLENTAQALLVRWYHEGLDAFEHTCPTGRTIYDAHHTQLIERLTTVGEQQ
GLDEFIHVCRQQHDSLKQQLEQGRDRLLEMHSNGGEQAQLLAQAIAEQDNDVNLVTFALN
LFDIVGINQEDRSDNLIILTPSDHMLVPDFPGLPQDGCTITFDRDQALSREDAQFISWEH
PLIRNGLDLVLSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTPV
RLLMDRKGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQADVHAMLQQAEALVETQARQ
LITEAQEQADLQLRRELERLEALKAVNPNIREDELTALENQREQVLSNLHEANWRLDAIR
LVVVTHQ
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcagcgctggatcagcgatacggaaagcgaacttggactggga
acggttgttgccgtcgatacgcgtatgattacgctgcttttccctgccagcggtgaaaac
cgactttattcccgcagcgacgcccccatcacccgcgtgatgttcaatcccggcgacacc
gtcaccagccatgaaggctggcagctcaaagtggatgacgtgcgagaagaaaaagggttg
ctggtgtattgcggccaacgcctggacgatgaaacgtcggcggaactgcgtgaagtcttt
ctggatagcaaactgacgttcaacaaaccgcaagatcgcctgttcgccggacagatcgat
cgtatggatcgctttgcactgcgctatcgcgcccgcaagcatcagaacgagcaggcgcga
caacaatggggcggattgcgcggcatgcgtgccagccttatcccccatcaacttcatatc
gctcatgaagtcggccaacgccacgcgccacgcgttttgctggcggacgaagtcggactg
ggaaaaaccattgaggcggggatgatcatccaccagcaactgctggcgggtcgtgctagt
cgcgtgctgattgtcgtgccggaaacgctgcaacaccagtggctggtcgaaatgctgcgc
cgctttaacctgctgttttccctgtttgacgacgagcgctatgccgaagccaagctggac
agcagcaatccgtttgaaactgaacagttggtcatctgctcactgggatttgtgcaacgc
agcgcccagcgctttgcgcagctcgtcaacgccgactgggatctgctggtggtggatgaa
gcccaccatctggtctggagcgaagaaagccccagcccagaatatcaggctattgaaacg
ctggcacgcgccacgccggccgttctgctgttaaccgcgacgccggaacagcttggccag
cagagccactttgcgcgcttacgcctgctcgatcccaatcgtttccacgactatcaggag
ttcgttgccgaacagcagcagtaccgtccggtcgccgatgccgtcacgttgctgttagcg
ggcgaaaaggctaaaacggctgaactgaatgcgctgagcgatctgctgggcgagcaggac
attgaaccgttactgaaagccatcaacagcgatagcgatgacaatcagaaagcgcgtcag
gaactgatcaccatgctgatggatcgccacggcaccagccgcgtgctgttccgtaacacc
cgtcaaggggttaaaggcttcccgcagcgtgtcctgcatcaaattcgcctgccgctgccg
gcgcagtaccaaacggcgattaaagtatccggcattatgaacgcgaataaggcgttggaa
gtccgcgcccgcgacatgctgtacccggaacaaatttatcaacagctcgaaggggacgat
gccacctggtggaacttcgatccgcgcgtagaatggttactgaactacctgaccgcacac
cgtgatgaaaaaatcctggtgatctgtgcacaggcagccaccgcgctacagctggaacaa
gtgctgcgcacgcgtgaagcgatccgcgccgccgtcttccatgaagggctgtcgattctt
gaacgtgaccgcgccgccgcctattttgcttctgaagaagaaggcgcacaggtgctgatc
tgttcagagattggttccgaaggccgtaacttccagtttgccagccatttagtgatgttc
gatctgccgttcaaccccgacctgctggaacagcgtattggtcgtctggaccgtatcggg
caggcaaaagaaattcagatcatggtgccgtatctggaaaataccgcacaggccttgctg
gtgcgctggtatcacgaagggctggacgcatttgagcacacctgcccgacaggccgtacc
atctatgatgcccaccacacgcagctgatcgagcgactgacgaccgttggtgaacagcag
ggactggatgagtttatccatgtttgccgtcaacagcacgacagcctgaagcaacagctt
gaacaaggccgcgatcgcctgctggaaatgcattctaacggtggtgaacaggctcaactg
ctagcgcaagccattgccgagcaggataatgacgtcaatttggtgacattcgccctgaac
ctgttcgatattgttggcatcaatcaggaagatcgcagcgataacctgatcattctgacg
ccatccgatcatatgctggtgccagacttcccgggcctgccgcaggacggctgtacgatc
actttcgatcgcgatcaggcgctctctcgcgaagatgcacagtttatcagttgggaacac
ccgctgatccgtaacgggctcgatctggtactgtccggcgataccggcagctgtgcggtg
tcactgctgaaaaataaagcgctgccggtcggcacactgctggcggaactggtttacgtg
gtggaagcgcaggcaccaaaacacctgcaactgacccgcttcctgccacctacgccagtt
cgcctgctgatggatcgtaaaggcactaatctggcagcacaggttgagtttgagagcttc
aaccgccagctcaatgcggtaaaccgtcatacatccagcaagctggtgaatgcggtacaa
gccgatgttcacgccatgttgcaacaggcggaagcgctggtcgaaacgcaggcacgccag
ctcatcaccgaggctcaggagcaggctgacctgcaattgcgccgcgagctggaacgtctg
gaagcgctgaaagccgtcaaccctaacattcgtgaagatgagttgaccgcactggaaaac
cagcgcgaacaggtgctgagcaacctgcatgaagccaactggcgtctggatgctattcgt
ctggttgtggtgacgcaccagtaa
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