Pectobacterium aquaticum: DMB82_0018565
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Entry
DMB82_0018565 CDS
T07653
Name
(GenBank) polysaccharide lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu00040
Pentose and glucuronate interconversions
paqu01100
Metabolic pathways
paqu02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
DMB82_0018565
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DMB82_0018565
Enzymes [BR:
paqu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
DMB82_0018565
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
UEM39095
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Position
3981912..3983036
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AA seq
374 aa
AA seq
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MKYLLPSAAAGLLLLAAQPTMAANTGGYATTDGGDVSGAVKKTARSLQEIVDIIEAAKKD
SSGKAVKGGAYPLVITYNGNEDALIKAAEANICGQWSKDPRGVEIKEFTKGITILGTNGS
SANFGIWMVNSSNVVVRNMRFGYMPGGAKDGDAIRIDNTPNVWIDHNEIFAKNFECDGTP
DNDTTFESAVDIKKASTNVTVSYNYIHGVKKVGLSGSSNTDTGRNLTYHHNIYSDVNSRL
PLQRGGQVHAYNNLYDGIKSSGFNVRQKGIALIESNWFENALNPVTARNDDSNFGTWELR
NNNIASPSDFAKYNITWGKPSTPHINADDWKSTGKFPAVPYSYSPVSAQCVKDKLASYAG
VGKNLAVLTAANCK
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacctactgccttctgcagccgctgggctgttgctgcttgctgcccaaccgaca
atggccgcaaatacggggggttatgccaccactgacggcggcgacgtttccggtgctgtg
aaaaaaaccgcacgctctctgcaagagatcgtcgatatcattgaggccgcaaaaaaggac
tcaagcggtaaagcggtcaaaggtggcgcctacccgctcgttattacttataacggtaat
gaagatgcgctaatcaaggccgctgaagctaacatctgcggccaatggagcaaagatccg
cgcggtgtagaaatcaaagagttcaccaaagggatcactatcctcggtaccaacggttct
tccgctaacttcggcatctggatggttaactcttccaacgttgtcgtgcgtaacatgcgc
ttcggctatatgcctggcggtgcaaaagatggcgatgccatccgtattgataacacgcca
aacgtttggatcgatcacaacgagatcttcgccaaaaacttcgaatgcgacggtacacca
gacaacgacaccacctttgaatcagcggttgatatcaagaaagcctcaaccaacgtcacc
gtgtcgtacaactatatccatggcgtgaaaaaggtagggttgagcggttcaagcaacacg
gatactggtcgtaacctgacttaccatcacaatatttacagcgatgttaactcacgtctg
ccgctgcaacgtggtggtcaagtgcatgcttataacaacctgtatgacggtatcaaaagt
tcaggctttaacgtccgtcagaaagggatcgcactgatcgaaagtaactggttcgaaaat
gcactcaacccagtgaccgcacgtaacgacgattccaacttcggtacctgggaactccgt
aacaacaacattgccagcccatctgattttgctaaatacaacatcacctggggtaaacct
tctacaccgcatatcaatgcggatgactggaaaagcactggcaagttcccagctgtcccg
tatagctactctccagtttctgcacagtgcgtgaaggataaactggcgagctatgccggc
gtaggtaaaaacctggcggtactgacagcagctaactgcaaataa
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