Pectobacterium aquaticum: DMB82_0019080
Help
Entry
DMB82_0019080 CDS
T07653
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03420
Nucleotide excision repair
paqu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DMB82_0019080 (uvrD)
03430 Mismatch repair
DMB82_0019080 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paqu03400
]
DMB82_0019080 (uvrD)
Enzymes [BR:
paqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DMB82_0019080 (uvrD)
DNA repair and recombination proteins [BR:
paqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DMB82_0019080 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
DMB82_0019080 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
PhoH
Motif
Other DBs
NCBI-ProteinID:
UEM39190
LinkDB
All DBs
Position
complement(4108289..4110451)
Genome browser
AA seq
720 aa
AA seq
DB search
MDVSDLLDGLNDKQRDAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAV
TFTNKAAAEMRHRIDHLIGTSQGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIRALNLDEKQWPPRQAMWFINGKKDEGLRPQHIESYGNPIEQTWQRVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHVLNHYRERFTNILVDEFQDTNRIQYAWIRMLAGDS
AKVMIVGDDDQSIYGWRGAQVENIQLFLKDFAGAETIRLEQNYRSTSNILKAANALIAHN
GGRLGKNLWTDGAEGEPISLYCAFNELDEARYVVNRIKAWQENGGALSDNAILYRSNAQS
RVLEEALLQQSMPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQLTLWQSTRALLQEKVLAGRAAASLQRFIELIDALAYETSELPLHIQ
TDRAIKDSGLWSMYEQEKGEKGQTRVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAAL
EAGEGQADANQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTITYAESRRLYGKEAYHRPSRFVGELPEECVEEVRLRASVSRPVNHQRLG
TPITQNDSGYKLGQRVRHAKFGEGTIVNLEGSGDHARLQVAFQGQGIKWLVAAYARLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgatctgctcgatggcctcaacgacaaacagcgtgacgcggtagccgcg
ccgcgcagcaatttattggtgctggcgggggcaggcagcggcaaaactcgggtactggtt
catcgtattgcctggctcttgtctgtcgaaaactgctcaccgtattccatcatggcggtg
acgtttaccaacaaagcggcggcggagatgcgccatcgtatcgaccatctgatcggcacc
agccagggtggcatgtggattggtactttccacgggctggcacaccgcctgctgcgtgcg
caccatatggatgccaatctgccgcaggatttccagattctggacagcgaagatcagctg
cgcctgctgaagcgcctgattcgggcgctcaatctggatgagaaacagtggccaccgcgt
caggcgatgtggttcatcaacgggaagaaagatgaaggcctgcgtccgcagcacattgaa
agctacggcaacccgatcgagcaaacgtggcagcgcgtgtatcaggcctatcaggaagcg
tgcgatcgcgccggactggtagatttcgccgaactgctgctgcgtgcgcacgagctgtgg
ctgaacaagccgcatgtgctgaatcactatcgcgaacgttttaccaatattctggtggac
gaattccaggatactaaccgtattcagtatgcctggatccgcatgctggcgggcgacagc
gccaaggtgatgatcgttggggatgacgatcagtctatttacggctggcgtggggcgcag
gtcgaaaatattcaactgttcctgaaagattttgccggcgcagaaacgatccgtttggag
cagaactatcgctcgaccagcaatatcctgaaagcggcgaatgcgctgattgcccacaac
ggcggacgactcggcaagaacctgtggaccgatggtgcagaaggtgagccgatttcgctg
tattgcgcgttcaacgagctggatgaggcgcgttacgtcgtcaaccggattaaagcctgg
caggaaaatggcggtgcgctgagcgataacgccattctgtatcggagcaacgcccagtcg
cgcgtgctggaagaggcgttgttacagcagagtatgccgtaccgtatctatggcggcatg
cgcttcttcgaacggcaggaaatcaaagatgcgctggcttatctgcgcctgatcgctaat
cgtaacgatgatgcggcgttcgagcgtgtggtgaatacaccgacacgcggcattggcgat
cgtacgctggacgtggtgcgccagacggcgcgcgatcgtcagctgacgctgtggcaatcc
acgcgggcgctgttgcaggagaaagtgctggctgggcgcgcggcggcctcgctgcaacgc
tttatcgaactgattgatgcgctggcctatgaaacctctgagctgccgctgcatattcaa
accgaccgggcgattaaggattccggcctgtggagcatgtacgaacaggaaaaaggcgag
aaagggcagacacgagtagaaaacctggaagaactggtgacggctacgcgccagttcagt
tatcaggaagaagatcaggatctgatgccgcttcaggctttcctgtcacatgccgcgctg
gaagcaggcgaaggtcaggctgatgccaatcaggacgcggtgcagctcatgacgctgcac
tcggcgaaagggctggaattcccgcaggtgtttatcgtagggatggaagagggcatgttc
cctagccagatgtcgctggatgaaggtgggcgtctggaagaagagcgtcgtttggcttat
gtcggcgtcacgcgtgcgatgcaaaaactgacgataacctacgcggaatcccgccgttta
tacggcaaagaagcctatcaccgaccttcccgatttgtcggcgaactgccggaagagtgc
gttgaagaagtgcggttacgcgccagtgtctcccgtccggtcaaccaccaacgcctcggc
acaccaatcacgcaaaacgacagcggctacaaactggggcagcgggttcgccacgccaag
ttcggcgaaggcacgatcgtgaatctggaaggcagcggcgatcacgcccgccttcaggtc
gcgtttcaagggcaaggcattaaatggctggtcgccgcttatgccagactggaaacggtg
tga
DBGET
integrated database retrieval system
