Pectobacterium aquaticum: DMB82_0019265
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Entry
DMB82_0019265 CDS
T07653
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
paqu
Pectobacterium aquaticum
Pathway
paqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMB82_0019265 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paqu03019
]
DMB82_0019265 (rhlB)
Enzymes [BR:
paqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DMB82_0019265 (rhlB)
Messenger RNA biogenesis [BR:
paqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DMB82_0019265 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
UEM39223
LinkDB
All DBs
Position
4145262..4146551
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AA seq
429 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPANAGRQTNQPRALIMAPTRELAVQIHSDAEALSQATGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPAASQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLA
CEEYALNLPAIETYIGHGIPVSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHNAPRRSGA
PRNNRKRAE
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcacccgcaggtt
atcgaagctcttgaaagtaaagggtttcataactgtacgcctattcaggcgttagctctg
ccattggctttgtcagggcgtgatgttgcgggtcaggcgcaaaccggtaccggcaagacg
ctggcttttcttgcgtctactttccattatctgctttcacaccctgcaaatgcagggcgt
cagaccaaccagccacgtgctttaattatggccccaacccgtgaactggctgtccagatt
cactctgatgcagaagcgctgtctcaggcaactgggctaaaattaggtttagcctacggt
ggcgacggctacgacaaacagcttaaagtgctggaaagcggcgttgatattctgatcggc
accaccggtcgcctgatcgactacgccaaacagaaccatatcaatctcggcgcgattcag
gttgtcgtgctggacgaagccgatcgcatgtacgatctcggcttcatcaaagacattcgc
tggctattccgccgcatgcccgcagcgtcacagcgcctgaacatgctcttttccgctacg
ctctcctaccgggtgcgtgaactcgcgtttgaacagatgaataacgccgagtatgtggaa
gtcgaaccagaacagaaaaccggccaccgtattacagaagaactgttttatccgtccaac
gaagaaaaaatgcgcctgctgcagacgctgctggaagaagagtggccggaccgctgcatt
attttcgcaaataccaagcatcgctgcgaagacgtctggggccatctggctgccgacggc
catcgcgttggactactgacgggcgacgtcgcgcagaaaaaacgtctgcgtattctggaa
gaatttacccagggtaatctggatattctggtggcaacggacgttgcagctcgcggtttg
cacattccttccgtgacccacgttttcaactacgatctgccggatgactgcgaagactac
gttcaccgtattggtcgtacgggccgtgcgggacaaagcggattctctatcagcttggcc
tgtgaagagtacgcgctgaatctcccagctatcgaaacctatatcggtcacggtatcccg
gtcagcaaatacaacagtgacgcgctgatgaatgatttacctgcgccgaagcgtttaacg
cgtccaccgcgttccaataatggcccgcgccgacacaatgcgccgcgccgcagcggagcg
ccccgtaataaccgtaaacgagcggaataa
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