Psychrobacter arcticus: Psyc_0342
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Entry
Psyc_0342 CDS
T00256
Symbol
fpg
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
par
Psychrobacter arcticus
Pathway
par03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
par00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Psyc_0342 (fpg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
par03400
]
Psyc_0342 (fpg)
Enzymes [BR:
par01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Psyc_0342 (fpg)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Psyc_0342 (fpg)
DNA repair and recombination proteins [BR:
par03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Psyc_0342 (fpg)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AAZ18211
UniProt:
Q4FUU7
LinkDB
All DBs
Position
complement(422692..423621)
Genome browser
AA seq
309 aa
AA seq
DB search
MPELPEVETTKTSLAPLLGQKVTNVQVFQPKLRWSIPDNLADLVDYTLDSVERRAKYLIL
NFIPLADDGISSTVQPRNLQPRQLLVHLGMSGSLQQHNHASDKRKHDHLIMSFIGADSTQ
TQLHYYDPRRFGSILWLEEYGDKLLNHLGPEPLSDAFTADYLYHLIQRSRQSIQTQNSKS
IKKQPIKRAIKSVIMEQQAVVGVGNIYATESLYLSGIHPATPANEVSYAQIVILVAHIKT
ILQKAIKLGGSTLRDFTVADGQTGYFQQTLNVYGRQGNACPHCESTLENIKLNGRASVYC
PLCQPIISM
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgccagaagtagaaacaacaaaaaccagccttgcacccttattaggtcaa
aaagtcaccaacgtacaagtatttcaaccaaaactgcgttggtcaatacctgataattta
gcagatttggttgattacacattagacagcgttgagcgacgagcaaagtatttaattctt
aattttataccgctagctgatgatggtatctcatctactgttcaacctaggaatttacag
ccgcgacagcttttggttcatcttgggatgtcaggtagccttcaacaacacaatcatgca
agcgataagcgcaaacatgaccatctaatcatgagttttatcggcgctgatagtacccaa
acacagctacactattatgaccccagacgctttggatctatcttatggcttgaagagtat
ggcgataaactgttaaatcatttgggacctgagccattatcagatgcgttcactgcagac
tatttatatcacctaatccaacgtagccgacagtccatccaaactcaaaacagtaaatcg
attaaaaagcaacccatcaaacgagccattaaatctgtgattatggagcagcaagctgtg
gtcggcgttggcaatatttatgcaactgaaagcttatatctctcaggtattcatcctgcg
accccagctaatgaagtgtcatatgcgcaaatagttatactggttgcccatatcaaaacc
attctacagaaggcaattaagcttggtggttccacactgcgtgattttaccgttgctgat
ggtcaaacaggctatttccaacagaccttgaacgtctatggtaggcaaggtaacgcttgt
ccacactgcgaatccactttagaaaacattaagctgaatggacgtgctagtgtctactgc
cctctttgtcagccaatcatttcaatgtaa
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integrated database retrieval system
