Psychrobacter arcticus: Psyc_1063
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Entry
Psyc_1063 CDS
T00256
Symbol
sbcC
Name
(GenBank) possible exonuclease SbcCD, C subunit
KO
K03546
DNA repair protein SbcC/Rad50
Organism
par
Psychrobacter arcticus
Brite
KEGG Orthology (KO) [BR:
par00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
par03400
]
Psyc_1063 (sbcC)
DNA repair and recombination proteins [BR:
par03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Psyc_1063 (sbcC)
Archaeal homologous recombinant proteins
Psyc_1063 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
ABC_tran
NTPase_1
nSTAND3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAZ18915
UniProt:
Q4FSU3
LinkDB
All DBs
Position
complement(1267100..1271023)
Genome browser
AA seq
1307 aa
AA seq
DB search
MRLIELRLKNLNSLKGEWHIDFSDAAFLNEGIFAITGQTGAGKTTILDAICLALYSQTPR
LGDITGSTNEIMTQGTGECSAEVIIEIDAKRYQCSWYQHRAHKKAKGNLLPIKHEISEVK
SGKILEEKKSKTSAYIQALIGMDFSQFTRSIMLAQGSFAAFLKSDIGDRAAILEKITGTA
IYAKISLNVHEKKRFEEDVLSKLQAGVDGLSLLSIEDENLQAAELKALNQQQSTQRQSFK
TLSEQLQWLNNVQQLQNNLSIYQSEFATAQQAQQAFVPEAKRLSIANKALEIDSQFRELS
YSRETVKKLDVEQQSLLSQIPAQQQALAQAACHLDDANTLGKQAADNLQTNLPVIAQVRE
LDHNIRQQSQSLVEYNQRKDLLVGNAQILCQEIQNHQQTADRTKTQLNNIDQYFSSYPEL
SDLDTDMTIFDSSCQRLRALLEDNSDFSAARISQHSLACQLQADFEILSKQQNTDLSLIA
QRREQLLNLQQQQAVVTQNQPLAIMRGEQEQIEHISAQIEQVRFKIKQRFELTRQIHKIN
LALPVLNQELTVLDDLIATHRVDIQSTKLKKHDKQTHLALLQKVARLEDYIVELKDGTPC
PLCGAHEHPYGQHHPLLDGQIDNKQALSLTQQTQQQISELETLIEHLEQALSKHHIDHAT
KNEAINHQQQQLAPLQQQCEMLGKDIQDSLLLLFDANKNHSKAIAGSVHPLYQLSEDINK
PDIDSNSDIESTLSLLDSAKQKLLEQKQSLKDLLIQHDDLTASISELNIAIKSDENQQQV
LMSKLNNLTTDIKLHSQKAGTIEDKIAANFLALAAITSSILSLADKYPADSYREYLSIDF
QRTDIQSALKQLDASIDEQTILDSSDYERHINRLRQQRSMLSQLKKHFNEQKNSQQQLSN
TLSTVRAQIDTKQAQLTSDESALKRLEHLIADKNVALEQVKSDRTAIFADKNTESEDTLL
RSAVDDAKAKQANAQRQLDSTQQVLAQLQSRQRQILAALQSATTALNTQQAVFLEHLEAA
QFMDEDAFIRARLPKEERDALHLRKLAIDSALQQAKSQLDSTQQSLEQNLSLAMTNASQE
TIAAQHQHIQMEIDQLSQQIGAIVQKLKDNENQKGQRAAQLTAINVQKEKLKIWQQLHIL
IGSADGKKYRTFAQGLTFEVMISHANSQLQKMSDRYLLIHDDSNPLELNVIDNYQGGDIR
STKNLSGGEGFIISLALALGLSQMASHNIRVDSLFLDEGFGTLDEESLDIALDTLTGLQQ
EGKLIGIISHVQALKDRILTQIKVEKISGGFSQISGQGCRRIVNDKV
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctaattgaattaagactaaaaaacctcaactccttaaaaggcgaatggcacatt
gattttagtgacgccgcttttcttaacgaaggtatctttgccattacggggcaaacaggc
gctggcaagaccaccattttggacgctatttgtttggcgctctacagccaaacgccacga
ctcggtgatattactggctctaccaatgagatcatgacccaaggtacaggagagtgctcg
gcagaagttattatcgagattgacgccaagcgatatcagtgttcatggtaccaacatcgt
gcccacaaaaaagccaaaggcaacttattaccgattaagcacgagattagcgaggtcaag
tctggcaagattttagaagaaaaaaaatccaaaacctctgcttatatccaagcgcttatt
ggcatggattttagccaatttacccgctccatcatgctggcgcaaggcagttttgctgcg
tttttaaaatctgatatcggtgatagagcggcgattttagagaaaataacgggtactgct
atctatgccaaaatctcactcaatgttcatgagaaaaaacgctttgaagaagatgtgctc
agtaaattgcaggcaggcgttgatggcttatccttgctaagtattgaagacgaaaatctg
caggcagccgagctaaaagcattaaatcaacagcaaagcacacagcgacaaagctttaag
acattaagtgagcagctgcaatggctaaataacgtacaacagctgcaaaataacctatct
atttatcaaagcgagtttgcaaccgcccagcaagcgcagcaagcctttgttccagaagcc
aagcgtttaagcattgccaacaaggcattagagattgatagccagtttcgcgagcttagc
tatagtcgtgagacggtaaagaagctagatgttgaacaacagagtttgctgagccaaatc
cctgcccagcaacaagcgctggcacaagctgcatgccatttagacgatgccaacacgcta
ggaaaacaagccgcagacaaccttcaaacaaacttgcctgtcatcgcacaggtgcgcgaa
ttagatcataatatcagacagcagtctcagtccttagtggaatacaaccagcgtaaggac
ttattggtaggtaatgcacagatattatgccaagaaatacaaaaccatcagcaaactgcc
gatcgcaccaaaactcagctaaataatatcgaccagtactttagcagctacccagagctg
agtgaccttgataccgatatgacaatctttgatagtagctgtcaacgattaagggcgcta
ctagaagataactctgatttttcagcagctagaattagccaacatagcctggcctgccag
ctacaagctgattttgagatattatccaaacagcaaaacactgatctttcattgatagcg
cagcggcgcgagcaactgctaaatctacagcagcagcaagcagtagtcactcaaaaccag
ccgcttgctattatgcgcggtgagcaagagcaaatcgagcacatcagcgcacagattgag
caagtgagatttaagattaaacaacggtttgagctgacccgtcaaatccataaaatcaat
ctcgcgctaccggtattgaatcaggaactgacggtcttagacgacttaattgccactcat
cgcgtagatattcagagcacgaagcttaaaaaacacgacaagcagacgcaccttgctcta
ttgcaaaaagtcgcaaggcttgaagattacatcgtcgagctcaaagatggcacaccctgc
ccgctgtgcggcgcgcatgagcacccttatggtcaacatcatccgctattagatggtcag
attgacaataaacaagcgttgtcgctgacgcagcagacccagcagcaaatatctgagctt
gagacgctcattgagcatctcgaacaagcattatctaaacatcatatcgaccatgctact
aagaatgaagccattaaccatcaacagcagcagttagccccgttacagcagcagtgtgag
atgttgggcaaagacattcaagatagcctgcttttactttttgacgccaataaaaatcat
tccaaagcgattgcagggagtgtccatccgctttatcaactgagtgaagatataaataaa
cctgacattgatagtaatagtgatattgaaagcactttatctttactagacagcgccaaa
caaaagctactcgagcaaaagcagtctcttaaagacctattaattcaacatgatgactta
acggcaagcatatcagagctaaatattgctataaagagtgatgaaaatcagcagcaggta
ctgatgagcaagttaaataatctgacgacggatatcaagctacactcgcagaaagcaggg
accattgaggataagatagccgccaactttttggcattagccgctattactagcagtatt
ttatcattggcagataagtatccggcggatagctatagagaatatttgagtattgatttt
caaagaacagacattcaaagcgcacttaagcaattggacgctagtattgatgagcaaacc
atactagatagcagcgactatgagcgtcatattaatagattacgtcaacaacgcagcatg
ctaagccagctaaaaaagcattttaatgagcaaaaaaatagccagcaacagctaagcaat
acattgagtacggtgcgcgctcaaattgacaccaaacaagctcagctcacctctgatgaa
agcgctctaaaaagactcgaacacttgatagcggataaaaatgtcgctcttgagcaggtc
aagagcgacaggactgcaatttttgcagacaaaaacacagagtctgaagacacactactg
cgcagcgcagtcgatgacgcaaaagccaaacaggcaaatgctcaaagacagttagacagc
acgcagcaagtattagcgcaattgcaaagcagacaacgacagatattggcagcattgcag
tctgctacgacagcactgaatacgcaacaagctgtatttctggagcatctagaagcggcg
cagtttatggatgaagatgcttttatccgtgcacgcctgcctaaagaagagcgtgatgct
ttacatctccgtaaacttgcgattgatagtgccttgcagcaggcaaagtcacagttagat
agcacccagcaatcattagagcagaacctgtctcttgctatgacaaatgccagccaagaa
acgattgctgcccaacatcagcacattcagatggagatagatcagctcagccaacagatt
ggtgctattgttcaaaagctcaaagacaatgagaaccaaaaaggtcaacgagcagcccaa
cttaccgccatcaatgtgcaaaaagaaaaattaaaaatttggcagcagctgcatatttta
attggttcagcggatggtaagaaatatcgcacctttgcacaaggcttaacctttgaagtt
atgattagccatgccaatagccaattacaaaagatgagtgaccgctatctgctgattcat
gatgacagcaatccgcttgagcttaatgtcattgataactatcagggcggcgatattcgt
agtaccaaaaacttatccggcggcgaaggctttatcatcagtctggcgcttgcccttgga
ttgtcgcaaatggccagtcacaatatccgtgtggattcgctgtttttggatgaaggtttt
ggcacgcttgatgaagagtcgttggatattgctctagataccttgactggcttgcaacaa
gaagggaaattgattggtataatctctcacgtacaggcgttaaaagatcgtatcttgacc
caaataaaggttgaaaaaatatctggcggctttagccaaatcagcggtcaagggtgtcgg
cgtattgtgaatgacaaagtataa
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