Psychrobacter arcticus: Psyc_1127
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Entry
Psyc_1127 CDS
T00256
Symbol
recB
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
par
Psychrobacter arcticus
Pathway
par03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
par00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Psyc_1127 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
par03400
]
Psyc_1127 (recB)
Enzymes [BR:
par01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Psyc_1127 (recB)
DNA repair and recombination proteins [BR:
par03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Psyc_1127 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AAZ18978
UniProt:
Q4FSN0
LinkDB
All DBs
Position
complement(1342783..1347270)
Genome browser
AA seq
1495 aa
AA seq
DB search
MTDFTDTSDIVELSTQPNLFDEYIDESHHSFDTPTHTPESEGISAAMSEQKENVIPAVDV
ALTGQHLIEASAGTGKTWTLTGIVLRLLIEARRAPEQIIATTFTRAAAAEMRQRIHDRLV
DFYQLLQWVNSLSAEPNNKDALYPDVLQVTPESGKEKQAAKGLSTDSDAEKAADEPNQDL
AYDKQITAEKRAQAKEKRKKWLVEQAKYARLDGIMEDPINLHLVGYLLDHVHSYPMTEAI
RRTALVLTTLDKLFVGTLDSLAQKWLIEYSSETGHQQGMAIIEDSSIEQVTDSIIHDELR
QFQSRLYHEQPKLYALMDQQGKLTAVSDHKKYVTRSLNFISAPIDEIKLEQGFDFVSYER
LLNEFAQLDLVDIQPYLNPDYRKSQGFNGASNLFKQFDAIIEVHQKIAEYKLAFTSYLNE
RENKILTSLQDSRYPNEDGKIKNFNKNKEKEHETFFELETISKLMALLDMADGLNQHILL
VSANLNRHIVLAVRDRLPIILEERGETTFSLQMARLNQALTGRQGEKLARYIRHHYPVAL
IDESQDINGEQAIMIESIYLPKSKRKQLANDKPLSTNKVSHEFLLLVGDPKQAIYGFRGG
DVANYNYMKAQFEKSSLWTLDINRRSNAGVIDALNCWFGMPTVTTAENKLAQLGSSIYYQ
HIKADKPENQLSWFNDLTVQNSTLVTEILSAQPVSVLHLPYDKELEYDEHEITARHIATL
LGSGQTLKGKPIQPSDIGVLARTKKDLKRVEDELLKLNVPTLTTSDVSIFETIMAEDVAA
LLSAMLYPYRHDMINRVLTSHLYGLSIKAVKAMMTDHESGVTESGDTIISTHSNSTNVKA
VDNKKSYQDFITYLKQAAQNWQHFGILSALHYLLDKNPVQPQGVWQALAAHPEGARHIMD
LRHMMDVLAQYGIGMGEHELLAWFRQNIEAAPNSDWAKQYPLPTESGVQLMTIHKSKGLE
FPIVYVLGMGDASRKSGNKEDYGLYLYNAQQNPSALVQQSTSNQRRFSPVKGSATTEGYY
TDIETQEDFDELRRLGYVAFTRASEQLYVVLRDPNSKTGFELKPVFYWFDAPEAKFDLPD
RLKGTIGMIRGHKVNEFYNDDTNAVGLAGNTTLATAKPITEAIEYAAFSEVMKTDYFYGW
AKTSFTALARQLDESTQALAVVDERMDDALDIDITESIVSFSSNQSLEPVSDLSLKSEDD
IRFTFVKGANAGTFLHEIFEKIDFSNKSQWSQVIDRAVSSYQLPLVYSSAEQQSRLLQAK
KKEDSRPVDLNSIDATKHEALIGWIEEVLQAPLLASNQPLQSIHAEQRFAELEFNMGLSE
SFKAQDINRLFQQYLPNEADKHVNLVPQNKTHLYRYLRGEIDLVYEHAGKYYVVDYKSNY
LGNSLIDYDESTLKQAMSKAGYWLQAAIYQVALHRFLAMRISDYSGNEDKYLGAVEYVFL
RGVYDSDSQAAADVSQDVNKPDNSLSMHNERYGLVTWDIPIEFIKALDALFGLPD
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atgacagactttaccgacacaagcgatatagttgaactttctacacaaccgaatttattc
gatgagtacatagatgagtcgcatcactcattcgatacgccgactcatacgcctgagagt
gaaggtataagtgccgctatgagtgagcagaaggaaaatgtgataccagcggtcgatgtt
gcgttgacgggtcagcatcttatcgaagcctcagccggtactggcaagacctggacacta
accggcattgtgctgcgcctgctgattgaagcgcggcgtgcgccagagcaaatcatcgcc
actacttttactcgagccgctgcggccgaaatgcgtcagcgtattcacgaccgtttggtg
gatttttatcaattgctgcagtgggttaatagcctaagtgctgaacccaataacaaggat
gctttgtatcctgatgtactacaggtgactcctgaaagtggcaaggagaaacaagctgcc
aaaggtttaagtacagattcagatgctgaaaaagctgctgatgaaccaaatcaagacctt
gcctatgacaagcagatcactgctgaaaaacgtgcacaggcaaaagaaaagcgtaaaaaa
tggctagtagaacaggctaaatacgcacgcttagatggcattatggaagatcccattaat
ctgcatttggtcggttatttgcttgaccatgtgcacagctatccaatgaccgaggccatt
cgacgcacggcactggtattaaccaccttggataaactgtttgtgggtacgctcgatagc
ttggcgcaaaagtggttgattgaatacagtagcgagacgggtcatcagcaaggcatggcg
attattgaagatagcagtatcgagcaagttactgacagtattattcatgatgagctgcgg
cagtttcaaagcagactgtatcacgagcagcccaaactgtatgcattgatggatcagcaa
ggcaagctgactgcggttagcgatcataaaaaatatgtgactcgttcgcttaactttatt
tcagcgccgattgatgagataaagctggagcaaggttttgattttgtctcgtatgagcga
ctacttaatgagtttgctcagttagatttagtagatattcagccgtatttaaaccccgat
tatagaaagtctcaagggtttaatggtgcttctaatttattcaaacagtttgatgccatc
attgaggtgcatcaaaagatagcggaatataagctagcatttactagctatttaaatgaa
cgtgagaacaagattcttacttcattgcaggattccagataccccaatgaagatggcaaa
attaagaattttaataagaataaagagaaagagcatgaaacttttttcgagttagaaacc
attagtaagttaatggctctcttagatatggctgatggactaaatcagcatattttgttg
gtatcagccaatctcaatcgtcatatcgtgcttgctgtgcgcgatagattgccaatcatc
ttagaagagcgcggtgagacaacctttagtttacaaatggcgcgcttaaaccaagcgtta
acgggtcggcaaggggagaagctggcacgttatattcgacatcactatccggtcgctttg
attgatgagtcgcaagacattaatggcgaacaggccattatgattgaaagtatctatttg
ccaaagagtaagcgtaaacagttggcgaatgataagccgttatccactaataaagtcagt
catgagtttttactgttggttggtgacccaaagcaggccatttatggatttcgtggcggt
gatgtagccaattataactatatgaaagctcagtttgagaaaagtagcctttggacgctc
gatattaaccgccgctcaaatgccggtgtgattgatgcactaaattgctggtttggcatg
ccaacggtaacgactgctgagaataaattagcacagttaggtagcagtatttattatcag
catatcaaagctgataaaccagaaaaccaactttcttggtttaatgacctaaccgttcaa
aacagtactttagtgacagagatactctctgcccaaccagtgagcgtattgcacctacct
tatgataaagagcttgagtatgatgagcatgaaatcacggcgcgtcatattgcgaccttg
ctcggtagtggtcagacgttaaaaggcaaaccgattcagcccagtgatatcggcgtgctg
gcacgtactaaaaaagacttaaaacgggttgaggatgagttgcttaaactcaatgtacca
accttgacaaccagtgatgttagtatctttgaaaccatcatggccgaagatgtggcggcg
ctgctgagtgccatgctgtacccatatcgtcatgatatgattaatcgggtgctgaccagt
catctgtatggtctgagtattaaagccgtcaaagccatgatgactgaccatgagtcagga
gtgacagagagtggcgatacgataataagcacccattcaaatagcactaatgtgaaagcg
gttgataataaaaaaagctatcaagactttattacctatctaaaacaagcggctcaaaac
tggcagcactttggtatcttgtcagcactgcattacttattagataaaaatcccgtgcag
ccgcaaggcgtttggcaagctctggcggctcatccagaaggcgctcgtcacatcatggat
ttgcgtcatatgatggatgtcttggcgcagtatggtatcggcatgggtgagcatgaatta
ttggcttggtttagacaaaatatagaggctgctcctaacagcgattgggctaagcagtac
ccgctacccacagagtctggtgtacaacttatgaccattcacaagtccaaagggcttgag
tttcccattgtctatgtattgggtatgggagatgccagcaggaagtcgggtaataaagaa
gactatgggttgtatctgtataacgcccaacaaaatccgtcagctttagtgcagcaatca
acaagcaatcagcgccgcttctcacctgtgaaaggctctgccaccacagagggttactac
accgatattgagacacaagaggactttgatgagctacgtaggcttggctatgtggcattt
actcgtgccagtgagcagctttatgtggtgttacgagatcccaatagcaaaacaggtttt
gaattaaagcctgttttctattggtttgacgctcccgaggcaaagtttgatttgcctgat
agactcaaaggcaccataggtatgatcagagggcataaggtcaatgagttctataacgat
gatactaatgcagtaggcttagcgggtaacacaacgcttgccactgccaagcccataaca
gaggctattgagtatgctgctttttcagaggtcatgaaaacagattacttttatggttgg
gccaagaccagttttacggctttagctcgtcagctagatgaatctacacaggcgctggct
gtggtagatgaacgtatggatgatgccctagatattgatataacagagtcgatagtatcc
ttcagtagtaatcagtctcttgaaccagtcagtgatttgagcctcaaatcagaggatgat
atccgctttacttttgtgaaaggcgccaatgcgggtacgtttttgcatgagatatttgaa
aaaattgatttcagcaataaatcgcagtggtctcaggtgattgatagagcggtcagtagt
tatcagctacctctggtttatagtagcgctgaacagcaaagccgactactacaagcaaag
aagaaagaagacagtcgtccagtggatctaaactcaatagatgctacaaaacatgaggca
ttgattggctggattgaagaggtgctacaggcgcctctattagcgtccaatcaaccctta
cagtctattcatgcagaacagcgatttgctgaattggagttcaatatggggttgtcagag
agctttaaagcacaggatattaatagactctttcagcagtatctcccaaatgaggcggac
aaacacgtcaatcttgttccacaaaataaaacacatctgtatcgttatttacgtggtgaa
atcgatttagtgtatgagcatgctggcaagtattacgttgtcgattataaaagtaattat
ttaggaaatagcctaattgattatgatgaaagtacactcaagcaagcaatgtcaaaggca
ggatattggctacaggccgcgatttatcaagtcgcattacatcgcttccttgccatgagg
attagtgattattcaggtaatgaagataagtatcttggggctgttgaatatgtcttttta
cggggcgtgtatgactcagactctcaagcagccgctgacgtatcacaagacgttaataag
cctgataatagcctctcaatgcacaatgaacgctatggattagtcacttgggatattcca
attgagtttattaaggccttagatgcgttatttggcctgccagattag
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