Psychrobacter arcticus: Psyc_1260
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Entry
Psyc_1260 CDS
T00256
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
par
Psychrobacter arcticus
Pathway
par02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
par00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Psyc_1260 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
par03021
]
Psyc_1260 (rpoD)
Transcription machinery [BR:
par03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Psyc_1260 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AAZ19110
UniProt:
Q4FS98
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All DBs
Position
1516085..1518028
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AA seq
647 aa
AA seq
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MSDASKRVFMNDKSVSKSTSQLATLIQMGKEQGYLTYAEVNDQLPDSITESDQIEDIIQM
LTDVGIKIFESAPDADDILMNDDSSDDDMAADEAAAVLASVETEPGRTTDPVRMYMREMG
TVDLLTREGEIAIAKRIEEGIRDVQHAMSYWPGTVQFVLDEYQKVQDGEKKLSDVITGFL
DPETEEDKIAAQEAKEAAKEERERIKEEKENPPIIKEKAKAKSGLDDDEDEDDVEEDAEE
ETSGIDPEEVRLRLEEIEHLFIKAKQALLDYGRGSAQANEAYEQLASRFMMLKLNNRLSD
QVMAIMHDVYDDVRKHERQIMRLVIRRGRMPREEFRKTFPSNETNVDWLIERIKGKPAFA
ATLEKVTDDVILLQRAIRDYEHKLEMEIHDMKDVARRMAIGEAKARRAKKEMVEANLRLV
ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISM
ETPIGDDEDSHLGDFIEDGTISSPVDDATAAGLREATRDVLGNLTEREARVLKMRFGIDM
PTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEND
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgcaagtaagcgagtatttatgaacgataagtcagtttctaagtccacatct
caactggccaccttaatccaaatgggtaaagagcaagggtatttaacctatgctgaggtg
aatgaccaactgcccgactctattaccgaaagcgatcagatcgaagatattatacaaatg
ctaaccgacgttggcatcaaaatctttgaatctgcgcccgacgccgatgacatcttgatg
aacgacgattcaagtgatgatgacatggcagcggatgaggcagcagcggtattggcttct
gttgagaccgaacctggtcgcaccactgaccctgtgcgtatgtatatgcgtgagatgggt
acggttgatctattaacccgtgaaggcgaaattgccattgccaagcgtatcgaagaaggt
attcgtgacgtacagcatgccatgtcttactggccgggcacggtacagttcgtccttgat
gaatatcaaaaagttcaagatggcgagaaaaaactttctgacgtcatcactggtttctta
gatcctgaaaccgaagaagacaaaatcgccgctcaagaagccaaagaagcggcgaaagaa
gagcgcgagcgcatcaaagaagaaaaagaaaaccctcctattatcaaagaaaaagccaaa
gcaaaatctgggcttgatgatgacgaggacgaggacgacgttgaagaggacgctgaagaa
gaaaccagcggtatcgatccagaagaagtgcgcttgcgcctagaagagattgagcattta
tttattaaagccaagcaagcattgcttgattatggtcgtggtagtgctcaagccaatgaa
gcttatgagcaactggctagccgctttatgatgctaaagcttaacaatcgcctatctgat
caagtcatggccatcatgcatgatgtctatgatgacgtgcgtaaacatgagcgtcaaatc
atgcgtttggtgattcgccgtggtcgtatgccgcgcgaagagttccgtaagactttccca
agtaatgaaaccaacgttgattggttgattgagcgtattaaaggtaagccggcgtttgct
gccacgctcgagaaagttaccgacgatgttatcttgttacaacgtgctatccgtgattat
gagcataagctcgagatggaaatccacgacatgaaagatgtggcacgccgtatggctatt
ggtgaagccaaagcccgccgtgccaaaaaagagatggttgaagccaacttacgtctcgtt
atctcaatcgccaaaaaatacaccaaccgtggtctacagttcttggacttgattcaagaa
ggcaacatcggcttgatgaaagcagtagataaatttgaatatcgccgtggttataaattc
tcaacctatgccacttggtggattcgtcaggcaatcacccgctctatcgctgaccaagca
cgtaccatccgtatccctgtgcatatgattgagaccatcaacaaaatcaaccgtgtgtct
cgtcagttattgcaagaaatgggacgcgagccaacgcctgaagaattaggcgaacgtcta
gagatggacgaagtcaaagtccgcaaagtgctaaaaattgccaaagagcctatctctatg
gaaacgccaatcggtgatgatgaagactcgcacctaggtgacttcatcgaagatgggaca
atctcaagtcctgttgacgatgcgacggctgccggtctacgtgaagcaacgcgtgatgtg
cttggcaacctaacggaacgtgaagctcgcgtcctcaaaatgcgttttggtatcgatatg
ccaaccgatcataccttggaagaagtcggtaagcagtttgatgtaacgcgtgagcgtatc
cgtcagattgaagcaaaagccttgcgtaagctacgtcatccgtcacgctctgagcatctg
cgctctttccttgaaaatgactaa
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