Psychrobacter arcticus: Psyc_1484
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Entry
Psyc_1484 CDS
T00256
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
par
Psychrobacter arcticus
Pathway
par03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
par00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Psyc_1484 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
par03400
]
Psyc_1484 (mfd)
Enzymes [BR:
par01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psyc_1484 (mfd)
DNA repair and recombination proteins [BR:
par03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Psyc_1484 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AAZ19332
UniProt:
Q4FRM6
LinkDB
All DBs
Position
complement(1801921..1805652)
Genome browser
AA seq
1243 aa
AA seq
DB search
MPITALTDAFAPINQQLFPIQNAQRRWLVPVHGAVSSLWLASLVQAPIWNVADRLKVVVT
RDQNQLNQIETELAFCGVDAHVFPDWETLTYDELSPHQDIVSERINLLTDMPTSGVLLIS
VQALMHRVAPPSWLIGQHFDLSVGDRFDINTQRALLAKAGYRAVDNVFEPGEFAVRGSII
DIFAMGQPFPLRLDLFDDEIETIRFFNPQTQRTLTIDDLKAMMSGNDSSMGKESLSLLHK
LPDISKPIKQFQILPAKEFPLDEGRETFRTNFAAMFPNSNSRKFELHKDVMAGIASSGLE
YYQPLFFDLKDWMVESSLFSYLPSDTLFITDELINEKQADYWSQIQRRYEERRHDIDKPI
VAPELLYLLSNTLNEHLNHYPRVILSARDKLTRMDNVAAIDSGEPTLAVKPQLDIQPQEL
SDKQQGLVTLSAQEPPQLAVNHQKAEPLTELLAFLELQAQTATPVLIVAETAGRREILIE
LFKGKIDIKAYDSFEAFLAADKTTGLNGKNLPQVGLTVAPIERGVYVPERLVLISETQLF
GRQVLQTRRRRQSGVSEEFLVKSVTEITDGSPVVHIEHGIGRYNGLITLDVGDGEQEFIH
LKYANDASIYVPVANLQMINRYSGGDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLN
MQARREAKVGIHFKIDPSQYELFASQFAFEETPDQANAIHAVMEDMRQNQPMDRLICGDV
GFGKTEVAMRAAFIAVSAGYQVAVLVPTTLLAGQHEDNFRNRFADWPVRIETLSRFGGKK
HQDTVLTDLAAGKVDIVIGTHKLLQPDVKFSNLGLMIVDEEHRFGVRHKERIKAIQTDVD
SMSMTATPIPRTLNMALSGMRDMSIIATPPARRLAIKTFVMQKTEALMKEAILRELLRGG
QVYLLHNDVASIERMAETIRELVPEARVGVAHGQMQERQLEQVMQQYYHKKFNVLICSTI
IETGIDVPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYCYLLVPSIKGLKGDAKRRL
HAIERANTLGAGFMLASEDLEIRGAGEILGKQQSGNMQAIGFSLYMDMLERATKAIKAGK
EPDLSTPLSLTSEINLHSSALIPEEYLHDVHQRLLFYKRIGNADDKEALTDIRTEMIDRF
GTLPDQTKQLFAVHGLRIQAEPLKINKIDANSNSMTLEFAPDTPVDALAIIKLIQSNGQC
YRMNGASGIRYQDADKLATPQQRVTVIQELLSYFSKHMVAESV
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcactgctttgactgacgcctttgccccgattaaccagcagttattccctatc
caaaacgctcagcggcgctggcttgtgcctgtgcacggtgcggtcagtagcttgtggctg
gcaagtttggtgcaagctcctatatggaatgtggccgaccgtctaaaagtcgtggtgacg
cgtgaccaaaatcagctcaatcaaatagagacagagctggcgttttgcggtgtcgatgct
catgtgtttcctgattgggagacactaacttatgatgagctgtcaccgcatcaagatatt
gtcagcgaacgtatcaatctattgaccgatatgccaacctcaggcgtgctgctgatatct
gtacaggcattgatgcatcgtgtggcaccgccaagctggttgattgggcagcattttgat
ttaagtgtgggagaccgatttgatatcaatacccagcgtgctctactcgcaaaagcaggt
tatcgagcggtagacaatgtctttgagccgggcgaatttgctgtacgtggtagtatcatt
gatatttttgccatgggtcagccgtttccactgcgtctggacttatttgatgatgaaatt
gaaacgattcgcttttttaatccgcagactcagcgtacgctgaccattgatgatcttaaa
gcaatgatgagtggtaacgatagcagtatgggcaaagagtcgttgtcgctactgcataaa
ttgccagatatctcaaagcctattaaacagtttcaaatcctacccgcaaaagagtttcca
cttgatgaagggcgtgaaacctttcgcaccaattttgctgctatgttccccaatagcaat
agccgtaagtttgagttgcataaagatgtgatggcaggcattgcgagtagtggacttgaa
tattatcagccactgttttttgatttaaaagattggatggtagaaagcagtttattttct
tatctgccaagcgatacgctattcatcactgatgagctgattaacgaaaaacaggccgat
tattggtcacaaatccagcgccgctatgaagagcgtcgtcacgatattgacaagcctatt
gtcgcccctgagttgctgtatttattatcaaatacccttaatgagcacctcaatcattac
ccacgggtgatactcagtgcacgtgataagcttactaggatggataatgttgctgcgatt
gacagtggagagccaacgttagcggttaagccacagctggatatacagccgcaggaatta
tctgataaacagcaagggttagtgacgttaagtgcgcaagagccgccgcagttggcagtg
aaccatcaaaaagcagagccacttactgagctattagcgtttttagaactacaagcgcaa
acggcgacgcctgtattgattgtcgctgagacagcaggtcgtcgcgagattcttattgag
ctgtttaaaggtaagattgatatcaaggcttatgatagctttgaggcgtttttagccgcc
gataaaaccactgggcttaatggtaaaaatttgccgcaggttggtcttaccgttgcgccc
attgaacgcggcgtctatgtgcctgagcgcttggtactgattagcgagacccaattattt
ggtcgtcaagtactgcaaacacgccgtcggcgccaaagcggcgtttcagaagagttcttg
gttaaaagcgtgactgaaataacagacggcagtcctgttgttcatatcgagcatggcatt
ggtcgttataatggtttgataacattagatgttggtgacggtgagcaagagtttattcac
ttaaagtatgccaatgacgccagtatttatgtgccggtcgctaatctgcaaatgattaat
cgctatagtggtggcgacccagcgcttgcaccattgcacaaaattggtagcggaaaatgg
gacaaagccaagcaaaaagcgctggagcaaatccatgatgttgcggctgagctgcttaat
atgcaagcacggcgtgaggcaaaggtcggtatccactttaaaatagacccatcacagtat
gagctgtttgcgagccaatttgcctttgaagaaacacctgaccaagccaatgccattcat
gcagtgatggaagatatgaggcaaaatcagcccatggatcgtctcatctgcggtgatgta
ggttttggtaaaacagaagtggccatgcgagccgcctttattgcggtcagtgccggttac
caagtcgcggtgctagtgccgaccaccttgctagcaggtcagcatgaagacaatttccgc
aatcgttttgctgattggccggtacgtattgaaacgctttcgcgctttgggggtaaaaaa
catcaagacactgtgctaacagacctcgcagcgggcaaggttgatatcgtaatcggtacg
cataaattattgcagcctgatgtgaagttctctaatctaggtttaatgattgtcgatgaa
gaacatcgctttggggtgcgtcataaagagcgcattaaggcgattcagaccgatgttgat
agtatgtcgatgacagcgactccgattcctaggacgctcaatatggcgctctctggtatg
cgtgatatgtcaattattgccacgccacctgctcgtcgccttgcgattaaaacctttgtt
atgcaaaaaacagaagccctgatgaaagaggcgatcttgcgtgagctgttgcgtggtggt
caggtttatttattgcataatgatgtcgccagtattgagcgtatggctgagaccattcgt
gagctagtgccagaagcgcgagtaggggttgctcatggtcaaatgcaagagcgccaactc
gaacaagtcatgcagcagtattatcataaaaaattcaatgtgctaatttgttcaactatt
atcgaaaccggtattgatgtacccaatgccaataccattatcattgaacgcgcggataag
tttggtttggcacagctacatcagctgcgcggtcgcgtgggtcgtagtcatcatcaggct
tattgctatctactggtaccctctatcaaagggctcaaaggcgatgccaagcgacgattg
catgctattgagcgtgctaacacactgggtgcaggctttatgctggcaagtgaagattta
gagattcgtggagctggtgagatacttggtaagcaacaaagtggtaatatgcaggcgata
ggctttagcttatatatggatatgctggagcgggcgacaaaagccattaaagctggtaaa
gagcctgatttaagtacaccattatcgctgaccagtgagattaatctacatagctcagca
ttgataccggaagaatatttgcacgatgtgcatcagcgtttgttgttttacaagcgtatt
ggcaatgccgatgataaagaggcactgaccgatattcgaactgaaatgattgatcgtttt
ggtaccttaccagaccagaccaagcagttatttgctgttcatggactgcgcatacaagct
gagccattgaaaattaataaaattgatgccaatagtaatagtatgacgcttgagtttgca
cccgatacgccggtcgatgccttggctattatcaagctgatccaatcaaatgggcagtgc
tatcgtatgaatggtgcgtctggcattcgttatcaagatgctgataaactggcaacgccg
caacaacgcgtcacagtgattcaagagttattaagttattttagcaagcatatggtggca
gagtcggtttag
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integrated database retrieval system
