Paraburkholderia sp. SOS3: BTO02_08325
Help
Entry
BTO02_08325 CDS
T04966
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
para
Paraburkholderia sp. SOS3
Pathway
para03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
para00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTO02_08325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
para03019
]
BTO02_08325
Enzymes [BR:
para01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BTO02_08325
Messenger RNA biogenesis [BR:
para03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BTO02_08325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
RPC3_helical
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
APR37535
UniProt:
A0A1L6I205
LinkDB
All DBs
Position
1:1812678..1814144
Genome browser
AA seq
488 aa
AA seq
DB search
MSDTVVTPSTATFDQFGLSADILKAIAEQGYTTPTPIQAQAIPVVLGGRDVMGAAQTGTG
KTASFSLPIIQRLLPAASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTPLRSAV
VFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVA
EGDKTGAVVQLIRERSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQSERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
FSANERKQLQDIEKLIKRPLEVQRLVVDAPVRHHHDDRGGRRSRDERDDRGSRRRSGGGF
ERGASHSHRQPPIDDFFLKPYEPSPSALSAASAKRDENDGAPQKPASKQPLAALLGGFGM
PRKPSSSS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagttgtcactcctagcaccgcgaccttcgaccagttcggcctgtcggcc
gacatcctgaaagccatcgcggagcagggctacacgacgccgacgccgatccaggcgcag
gcgattcctgtcgtgctgggcggccgcgacgtcatgggcgccgcgcagaccggcaccggc
aagactgccagcttctcgctgccgatcatccagcggctcttgccggccgcaagcacgagc
gcctcgccggcgcgccacccggtgcgcgcgctgatcctgacgccgacgcgcgaactggcc
gaccaggtggccgcgaacgtgcaggcatatgcgaaacacacgccgctgcgcagcgccgtt
gtgttcggcggcgtcgacatgaacccgcaatcggcggaattgcggcgcggcgtcgaaatc
ctgatcgcgacgccggggcgcctgctcgaccacgtgcagcaaaaaaccgcgaatctcggc
caggtgcagattctcgtgctcgacgaagcggaccgcatgctcgatatgggctttctgccc
gacctgcagcgcatcctgaacctgctgccgaaagagcgtcagacgctgctcttttccgcg
acgttctcgggcgaaatcaagaagctggcggccacctacctgcgcaacccgcagaccatc
gaagtcgcgcgcagcaactcgacggcgaccaacgtcacgcagatcgtctatgaagtcgcg
gaaggcgacaaaaccggcgcggtcgtgcaactgatacgcgagcgcagcctcaagcaggtc
atcgtgttttgcaacagcaagatcggcgcgagccggctcgcgcggcaactcgaacgcgac
ggcgtggtcgcgaccgcgattcacggcgaccgttcgcaaagcgagcggatgcaggcgctc
gacgccttcaaacgcggcgagatcgaagcgctcgtcgccaccgatgtcgcggcgcgcggc
ctcgatattgccgaattgccggccgtcatcaacttcgatttgccgttcaatgcggaagac
tacgtgcaccgcatcggccgcacggggcgcgcgggcgcatcgggcgatgcgctgtcgctg
ttcagcgcgaacgaacgcaagcagttgcaggatatcgagaagctcatcaagcggccgctc
gaagtccagcggctcgtcgtcgatgcgccggtgcggcaccatcacgacgatcgcggcggc
cgtcgcagccgcgacgagcgcgatgaccgcggcagccggcgccgttcgggcggcggcttc
gagcgcggcgcttcgcattcgcaccgtcagccgccgatcgacgacttcttcctgaagccg
tacgagccgtcgccgagcgcgctgtccgcggcatcggcgaagcgcgacgagaacgacggt
gcgccgcaaaagccggcgtcgaagcagccgctcgccgcgctgctaggcggcttcggcatg
ccgcgcaagccttcttcgtcttcctga
DBGET
integrated database retrieval system
