Paraburkholderia sp. SOS3: BTO02_12605
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Entry
BTO02_12605 CDS
T04966
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
para
Paraburkholderia sp. SOS3
Pathway
para03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
para00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTO02_12605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
para03021
]
BTO02_12605
03019 Messenger RNA biogenesis [BR:
para03019
]
BTO02_12605
Transcription machinery [BR:
para03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BTO02_12605
Messenger RNA biogenesis [BR:
para03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BTO02_12605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
APR36113
LinkDB
All DBs
Position
1:2820144..2821406
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AA seq
420 aa
AA seq
DB search
MHLSELKTLHVSQLIEMANGLEIESANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKNNSEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagcttaagactctgcacgtgtcacagttgatcgaaatggccaatggc
ctcgagatcgaaagtgcgaaccgcctgcgcaagcaggaattgatgttcgccattctcaaa
aagcgcgcgaagacgggcgaaacgatcttcggtgacggcacgctcgaagtgctgccggac
ggcttcggtttcctgcgctcgccggaaacgtcgtatctcgcgagtacggacgatatttac
atcagtccgtcacaaattcgccgtttcaatctgcatacgggcgatacgatcgaaggcgaa
gtgcgcacgccgaaagacggcgaacgctatttcgcgctcgtgaaagtcgacaaggtcaac
ggccagccgccggaggcgtcgaagcacaagatcatgttcgagaatctgacgccgctgcac
ccgaacaaggtgctgctgctcgaacgtgaaatgcgcggcgaagaaaacgtcacgggccgc
atcatcgacatgatcgcgccgatcggcaagggccagcgcggcctgctcgtcgcgtcgccg
aagtccggcaagaccgtgatgcttcagcacatcgcgcacgcgatcaagcagaaccatccg
gacgtcgtgctgttcgtgctgctgatcgacgaacgtcctgaagaagtgacggaaatgcag
cgctcggtggcgggcgaagtgattgcgtcgacgttcgacgaaccggccgcgcgtcacgtg
caggttgccgaaatggtgatcgaaaaagcgaagcgcctcgtcgaaatgaagaacgacgtc
gtgattctgctcgattcgatcacgcgtcttgcacgcgcgtacaacacggtcgtgccggca
tcgggcaaggtactcacgggcggtgtcgacgccaatgcgctgcagcgtccgaagcgcttc
ttcggtgcggctcgcaacatcgaggaaggcggctcgctgacgattatcggcaccgcgctc
atcgaaaccggcagccgcatggacgacgtgatctatgaagagttcaagggcaccggcaat
atggaagtgcacctcgagcgtcgtctcgcggaaaagcgtgtctacccgtcgatcaacctg
aacaagtcgggcacgcgccgcgaagagctgctgatcaagcccgagatcctgcaaaagatc
tgggtgctgcgcaaattcattcacgacatggacgaagtcgaagcaatggaattcctgctc
gacaagatccgccagacgaagaacaactccgagttcttcgacatgatgcgccgcggcggt
tga
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