Paraburkholderia sp. SOS3: BTO02_15315
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Entry
BTO02_15315 CDS
T04966
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
para
Paraburkholderia sp. SOS3
Pathway
para03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
para00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTO02_15315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
para03019
]
BTO02_15315
03009 Ribosome biogenesis [BR:
para03009
]
BTO02_15315
Enzymes [BR:
para01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BTO02_15315
Messenger RNA biogenesis [BR:
para03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BTO02_15315
Ribosome biogenesis [BR:
para03009
]
Prokaryotic type
rRNA processing factors
BTO02_15315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
APR37724
UniProt:
A0A1L6I2L1
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All DBs
Position
1:3428046..3431480
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AA seq
1144 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVEMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGQPGTPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEK
PAPSAPVRTAAATPAPVAVTPASGGFIGWLKGLFGMQPTAPAAQPAPAEKTARPARGERA
ERGERTGERGGERGGDRNRRGGAARDKVTRDKVTRGEGAAAGGRQGQQPRREERETCETR
GGRDGREGREGREGRDNRGEGREGREPRESRERDSRENRVERAERGQDRAAERADTAEAG
ARGERQERGERRERADRGERRRQQQENADALSQTEAQAADTALQTQANLTDGVMPVDQEV
ARDGEERRRRRRGRRGGRREREEEGVNVNTAADVAEAEGDSASVPAEMPVRAPEYAGRHE
TQQAAQAAVEVVVAAVATQSHVVTELQPADETPPLAAEKAATVQHMEPVASQPAPVVSEP
AATHAQPEPSAAPAPVAPAPAPAPSHAEAAPAAAFDAPSAAPQTADEASAPVAAASAPAS
TPASAAVEPSGAAATQPESQPAATAPAHVEAAAPQPAAPAYAPAPQQVEAPRTATFEAAE
PAGTTIEPVRETETAAEPAAAPVAASAAAASPAAAVAHEQASVAPQAARANGTHSAAAAS
PQALQSMLEGAGLVWVNTDADKLRAAQQAAAQVVPPVRAPRERKPLPPVDTAPMQQVETV
KHPQ
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaattgcgcgtcgccatcgtcgat
gggcaaaaactcatcgacatcgatatcgaaaccgccggccgcgaacagcgcaaaggcaat
atctacaagggcatcgtcacacgtatcgagccgtcgctcgaagcctgtttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttccgcgat
ggcgtcgaaatgcgctccgcgcgcatccaggacgcgttgaaggaaggccaggaactgatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgcggccctcaccacgtttatctcg
ctcgccggccgctatctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgaccggcaggaactgcgcgaaacgatggcgcagctgcaactgccc
gagggcatgagcatcatcgcgcgcacggccggcatcggccgcagcgccgaagaactgcag
tgggacctgaactacctgatgcagctgtggcgcgcgatcgaggccgcctcgcaaagcggc
cagcctggcacgccgatgctgatctatctcgaatcgagcctcgtgatccgcgcgatccgc
gactacttccagcccgatatcggcgaaatcctcatcgatacgaccgaaatccatgaccag
gcgcgcgccttcatggacatcgtgatgccggacaacgtcagcaaggtcaagcgctaccac
gacgacgtcccgctcttctcgcgcttccagatcgagcatcagatcgaaaccgcgtattcg
cgcacggtgccgctgccctcgggcggcgcgatcgtgatcgaccataccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgccaccaaaggcgccgacatcgaggaaaccgcggcg
cgcacgaacctcgaagccgccgacgaagtcgcgcgccagctgcgtctgcgcgatctgggc
ggcctgatcgtgatcgacttcatcgatatggagtcggccaagagccagcgtgaagtcgag
caacgcctcaaagacgcgctgaagcacgaccgcgcgcgcgtgcagatgggcaagatttcg
cgcttcggtctgatggaactgtcgcgccagcggctgcgtccggcgctctcggaaggcagc
cacgtgacctgcccgcgctgcaacggcaccggccatatccgcgataccgaatcgtccgcg
ctgcaggtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgacggccttcctgctcaacgaaaagcgctcggaaatcaac
aagatcgaatcgcgcttcaaggtcaacgtcgtgctcgtgccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgacccgcgcgcg
tcgtggaagatggccgaggaagcggctcgcgaactcgagtcggaaacgggttacagcaag
cgcaccgaagaagtgaagccgaagcaggaagcggcggtcaagggcatcacgcccgagaag
ccggcgccgagcgcaccggtgcgaaccgctgcggccacaccggcgccggttgcggtcacg
ccggcttcgggcggctttatcggatggctcaagggcctgttcggcatgcagccgacagcg
ccggccgcccagccggctccggcggaaaagaccgcccggcctgcacgcggcgagcgcgcc
gaacgtggcgagcgcacgggtgaacgcggcggcgaacgcggtggcgatcgcaaccgccgt
ggcggcgcggcgcgcgacaaggtcacgcgcgacaaggtcacgcgcggcgaaggcgcggcg
gccggcggccgtcagggtcagcagccgcggcgcgaggagcgtgaaacgtgcgagacgcgt
ggcggccgggatggacgcgaaggtcgcgagggtcgcgaaggtcgcgacaaccgcggcgag
ggccgtgaaggtcgcgagccgcgtgaaagccgcgagcgcgacagccgcgaaaaccgcgtc
gagcgcgcggaacgcggtcaggaccgcgcagccgagcgcgccgatacggcggaagccggt
gcgcgcggcgagcgccaggagcgtggtgaacgccgcgagcgcgcagaccgcggcgagcgg
cgccgtcaacagcaggaaaatgccgatgcgctgagccagaccgaagcgcaagccgcggac
accgctcttcagactcaggcgaacctgaccgacggcgtcatgccggtcgaccaggaagtc
gcgcgcgacggcgaagagcgtcgccggcgccgccgcggccgtcgtggcggccgtcgcgag
cgtgaagaggaaggcgtcaacgtcaacacggcagccgatgtcgcggaagcggaaggcgat
agcgcgagcgtgccggcggaaatgccggtgcgtgcgccggaatatgcgggccgccatgaa
acgcagcaggcggcacaggccgcggtggaagtggtcgtagcggccgttgcgactcaatcg
cacgtcgtcaccgaattgcaaccggccgacgaaacgccgccgctcgcagccgaaaaggcc
gcgacggttcagcacatggaaccggtggcctcacaaccggcgccggtcgtcagcgaaccg
gcggcaacgcatgcacagcccgagccgtcggctgctccggcgcccgttgcgcctgcaccg
gcaccggcaccgtcgcacgccgaggctgctccggctgccgcattcgacgcaccgtcggct
gcgccgcaaaccgccgacgaagcatcggcgcccgttgcagccgcttctgccccggcttcc
actccggcttcggccgcggtcgaaccgtcgggtgcagcggcaacgcagccggagtcacaa
ccggccgcgacagcaccggctcacgtcgaagccgccgcgccgcaacctgcagctccggcc
tatgcgcccgcgccgcagcaagtcgaagcgccgcgtacggcaaccttcgaagccgccgag
ccggcaggaacgaccattgaaccggtacgtgaaactgaaacagcagccgaaccagcggcg
gcgcccgtagcggcgagcgccgccgctgcgagcccggctgccgccgtcgcgcacgagcag
gcgtccgtcgcgccgcaagcagcacgcgccaacggcacgcactccgcggccgcagcgtcg
ccgcaagcgttgcagtcgatgctcgaaggcgcgggcctcgtctgggtgaacaccgatgcc
gacaagctgcgcgcagcacagcaagccgccgcgcaggtcgtgccgccggtgcgcgcgccg
cgcgagcgcaagccgctgccgccggtcgacaccgcgccgatgcaacaagtcgaaacggtg
aagcacccgcagtaa
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