Paraburkholderia sp. SOS3: BTO02_20190
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Entry
BTO02_20190 CDS
T04966
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
para
Paraburkholderia sp. SOS3
Pathway
para02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
para00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BTO02_20190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
para03021
]
BTO02_20190
Transcription machinery [BR:
para03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BTO02_20190
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF7853
Motif
Other DBs
NCBI-ProteinID:
APR37887
LinkDB
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Position
2:complement(19860..22259)
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AA seq
799 aa
AA seq
DB search
MVKTTGGKKATGKGSGQPTTKVTEARSATSVTKTSAESATPARKRTSTVSAARAAPVQAA
KAVAAVTKRPGAGSSKEDARDAAAAQDDAAVRESPVSTVQPAVVHQPRVETTAGTANSMT
KKLNEVSVDDDATTQNEEVATPVQGKGEKAKARDRRAKEKALLKDAFASTQPGTAEELEE
RRSKLRALIKLGKERGFLTYAEINDHLPDNFAETEAIEGIISTFNDMGVAVYEQAPDAET
LLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLIDENAEDADGFSEQE
AEAIESEDEEAEEGEEEEEEDDDGAAQATANAAQLEALKRMSLEKFALISEWFDKMRRAF
EKEGYKSKSYLKAQETIQNELMSIRFTARTVERLCDTLRAQVDEVRQVERQILHTVVDKC
GMPRAEFIARFPGNETDLEWSDKIVAEGHSYSAILTRNIPAIREQQQRLLDLQARVVLPL
KDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETG
LEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPADAA
LHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSDKLKSFLEGN
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggtaaagactacaggcggaaagaaagcgacaggcaaaggctcagggcagccgaccacg
aaggtcacagaggccaggtccgcaacttccgtaacaaaaacgtctgccgagagcgccacg
ccagccaggaagcgtacttccaccgtttccgccgcgcgagcggccccggtgcaggcggcg
aaagctgtcgcagcggtgacgaaacggccgggcgccggaagctcgaaggaagacgcaagg
gacgcggctgccgcgcaggacgatgcggcagtgcgcgaatctccagtatccacggttcaa
ccggctgttgtccaccagccgcgagtcgagactacagccggtacggcgaactccatgacg
aaaaagctgaacgaagtatccgtcgatgacgacgcaaccacccagaacgaagaagtcgca
actcccgttcagggcaaaggcgaaaaggccaaggcacgcgaccgccgggcgaaggaaaaa
gcgctgctgaaggatgcgttcgcctccacgcagccgggcaccgcggaagagctcgaggag
cggcgctccaagctgcgcgcgttgatcaagctcggcaaggaacgcggcttcctgacctac
gcggaaatcaacgaccacctgccggacaatttcgccgagaccgaggcgatcgaaggcatc
atcagcacgttcaacgacatgggcgtggctgtctacgagcaggcgcccgatgccgaaacg
ctgctgctgaacgacaacgcgcccgccgcatcgtcggacgacgaagtcgaggaagaagcg
gaagttgcgttgtcgacggtcgattccgaattcggtcgcacgaccgacccggtgcggatg
tacatgcgcgagatgggcacggtcgaactgctcacgcgtgaaggcgaaatcgaaatcgcg
aagcggatcgaagatggcctgaagcacatggtcatggcgatctccgcatgcccgaccacg
atcgcggacatcctcgcgatggctgagcgcgtcgcgaacgaagagatccgcatcgacgaa
ctcgtcgacggtctgatcgacgaaaacgccgaagacgcggacggcttctcggagcaggaa
gcggaagcgatcgagagtgaagacgaggaagccgaagagggcgaggaagaagaggaagag
gacgacgacggcgccgcgcaagcgacggcgaatgccgcccagctcgaggcgttgaagcgc
atgtcgctcgaaaaattcgcgctgattagcgaatggttcgacaagatgcgtcgcgcgttc
gagaaggaaggctacaagtcgaagtcgtacctgaaggcgcaggaaacgattcagaacgag
ctgatgtcgatccgcttcaccgcacgcaccgtcgagcgtctgtgcgacacgctgcgtgcg
caggtggacgaagtgcgccaggtcgagcgtcagatcctgcacacggtcgtcgacaagtgc
ggcatgccgcgcgccgaattcatcgcccgcttcccgggcaatgaaacggacctcgagtgg
tcggacaagatcgtcgccgaaggtcattcgtacagcgcgatcctgacgcgtaacatcccg
gcgatccgcgagcagcagcagcgtctgctcgatctgcaggcgcgcgtggtgctgccgctg
aaggacctgaaggaaaccaaccgtcagatggcggccggcgaactgaaggcgcgtcaggcc
aagcgcgagatgaccgaagcgaacctgcgtctcgtgatctcgattgcgaagaagtacacg
aaccgcggtctgcagttcctcgacctgatccaggaaggcaacatcggtctgatgaaggcc
gtggacaagttcgaataccgccgtggctacaagttctcgacgtacgcgacgtggtggatc
cgtcaggccatcacacgctcgatcgcggaccaggcgcgcacgatccgtattccggttcac
atgatcgaaacgatcaacaagatgaaccgcatctcgcgtcagattctgcaggaaaccgga
ctcgagccggatccggcgacgctggccgagaagatggagatgccggaagacaagatccgc
aagatcatgaagatcgcgaaggaaccgatctcgatggaaacgccgatcggcgacgacgac
gattcgcatctgggcgacttcatcgaagacacgaacacggttgcaccggccgatgccgcg
ctgcatgcaagcatgcgcgacgtcgtgaaggacgtgctcgactcgctgacgccgcgcgaa
gcgaaggtattgcgcatgcgtttcggtatcgagatgagcacggaccatacgctcgaggaa
gtcggcaagcagttcgacgtcacgcgtgagcgtatccgtcagatcgaggcgaaggcgctg
cgcaagctgcgtcacccgagccgttcggacaagctgaagtcgttcctcgaagggaattga
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