KEGG   Paraburkholderia sp. SOS3: BTO02_20260
Entry
BTO02_20260       CDS       T04966                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
para  Paraburkholderia sp. SOS3
Pathway
para03030  DNA replication
para03410  Base excision repair
para03420  Nucleotide excision repair
para03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:para00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BTO02_20260
   03410 Base excision repair
    BTO02_20260
   03420 Nucleotide excision repair
    BTO02_20260
   03440 Homologous recombination
    BTO02_20260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:para03032]
    BTO02_20260
   03400 DNA repair and recombination proteins [BR:para03400]
    BTO02_20260
Enzymes [BR:para01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BTO02_20260
DNA replication proteins [BR:para03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BTO02_20260
DNA repair and recombination proteins [BR:para03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     BTO02_20260
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BTO02_20260
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 NYN_YacP
Other DBs
NCBI-ProteinID: APR40066
LinkDB
Position
2:complement(37118..39820)
AA seq 900 aa
MVDGSSYLYRAYHAMPDLRGPDGAPTGALYGIINMLRRMRKEVTAEYSACVFDAKGKTFR
DDWYPQYKANRPPMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLAKQAEKHGM
KVVVSTGDKDLAQLVTDHVTLINTMTNETLDREGVLARFGVPPERIVDYLSLIGDTVDNV
PGVEKCGPKTAVKWLTQFETLDGIVAHAAEIKGAVGDNLRRALDFLPMAKKLVTVDTACD
LSQHIDSIEASLASREEARDELRDVFTRHGFKTWLREVEAAEAVEGPGAGETPAPVIDGV
RHYETVQTWEKFDEWLAKIDAAEITAFDTETTSLDPMVAELVGLSVSVEPGHAAYIPVAH
RGPDAPVQLPRDEVLAKLKPWLESADRKKVGQHLKYDEQVLANYGIAMEGIEHDTLLQSY
VLESHRSHDMDSLALRHLGLKTIKYEDVAGKGAQQIGFDEVALEQAAAYAAEDADITLQL
HQTLYPQVKAEAGLDFVYASIELPTARVLRKMERNGVLIDAQKLQQQSNEIALRLIELEK
EAYVLAEGEFNMGSPKQIGQIFFEKLQLPVIKKTPSGAPSTDEEVLQKLAEDYPLPKLLL
EHRGLSKLKSTYTDKLPRMVNARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRSGEGRR
IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLSSFAQGEDIHRATASEVFGVTPIE
VSSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGVARYMDDTRAS
AKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQKWLD
ESRIGTRMIMQVHDELILEVPDEELSQVRERLPELMCGVASLKVPLVAEVGAGANWEEAH
NT seq 2703 nt   +upstreamnt  +downstreamnt
ttggtcgacggttcgagttatctgtaccgggcctatcatgcgatgcctgatttgcgcggc
cccgatggtgcaccgacgggcgcgctgtacggcatcatcaatatgctgcgccgcatgcgc
aaggaagtcacggcagagtatagcgcgtgcgtgttcgacgcgaagggcaagaccttccgc
gacgactggtacccgcagtacaaggccaaccgcccgccgatgccggacgacctgagccgg
cagatcgagccgattcatgtggcggtgcgcgcgctcggctggccgcttctgatgatcgac
ggcgtcgaggccgacgacgtgatcggcacgcttgcgaaacaggccgagaagcacggcatg
aaggtggtcgtttccaccggcgacaaagatctcgcgcagctcgtgactgaccatgtcacc
ctcatcaatacgatgacgaacgagacgctcgatcgtgaaggcgtgctcgccaggtttggc
gtgccgcccgagcggatcgtcgattatctgtcgttgatcggcgataccgtcgacaacgtg
cccggcgtcgagaagtgcggcccgaagacggccgtcaaatggctcacgcaattcgaaacg
cttgatggcatcgtcgcacatgcggccgagatcaaaggtgcggtaggagacaatctgcgc
cgtgcgctcgatttcctgccgatggcgaagaagctcgtgaccgtcgatacagcatgcgat
ctgagccagcatatcgattcgatcgaagcgtcgcttgcttcgcgcgaggaagcgcgcgac
gaactgcgcgatgttttcacgcggcatggcttcaagacctggctgcgcgaagtcgaagcg
gcggaagcggtcgaagggccgggcgcaggcgagacgcccgcgccggtcatcgatggcgtg
cgacactacgagacggtgcagacgtgggaaaaattcgacgagtggctcgcgaagatcgac
gccgcggaaataaccgcgttcgataccgaaacgacgtcgctcgatccgatggtcgccgaa
ctcgtcggcttgtcggtatcggtcgagccggggcatgcggcatatattccggtcgcgcat
cgcggccccgatgcgccggtgcaactgccgcgcgacgaggtgctcgcgaagctcaagccg
tggctcgaaagcgccgatcggaaaaaggtcggccagcatctgaaatacgatgagcaggtg
ttggcgaactacggcatcgcgatggagggcatcgaacacgacacgctgttgcagtcgtac
gtgctcgaatcgcaccgttcgcacgatatggacagtctcgcgctgcgtcatctgggcctg
aagacgatcaagtacgaggacgtcgcgggcaagggcgcgcagcagatcggtttcgacgaa
gtcgcgctcgaacaggccgccgcctatgcagccgaagatgccgatatcaccttgcagctg
catcaaacgctctatccgcaggtgaaggccgaagccgggctcgatttcgtttacgccagc
atcgaattgccgactgcgcgcgtgctgcgcaagatggagcgcaacggtgtgctgatcgac
gcgcagaagctgcagcagcaaagcaacgagattgcgctgcgcctcatcgagctcgaaaag
gaagcgtacgtgctcgccgaaggcgaattcaatatgggctcgccgaagcagatcggacag
atcttcttcgagaagctgcaactgccggtgatcaagaagacgccgagcggtgcgccgtcc
accgatgaagaagtgctgcaaaagctcgccgaagattacccgctgccgaagctgctgctc
gagcatcgcggcctgtcgaagctgaagtcgacctacacggataagctgccgcgcatggtc
aacgcgcgcaccggccgcgtgcatacgaattacgcacaggcggttgcggtaacgggccgg
cttgcatcgaacgatccgaacctgcagaacattccggtgcgcagcggcgaaggccggcgc
atccgcgaggcgtttatcgcgccgccgggccacaagctcgtgtcggccgactactcgcag
atcgaactgcgcatcatggcgcacatttcgggcgacgagtcgttgctgagctcgttcgca
caaggcgaggacatccaccgcgccactgcgtccgaagtgttcggcgtcacgccaatcgaa
gtgagctccgatcaacgtcgcatcgcgaaggtgatcaacttcggcttgatctacggcatg
agctcgttcgggctcgcatcgaacctcggcatcacgcgcgatgcggcgaagctttatatc
gaccgctatttcgcgcgctatcccggcgtcgcacgctatatggacgatacgcgcgcgagc
gcgaaggcgaagggctatgtggagacggtgttcgggcgccgtctgtggctgcccgagatc
aacggcggcaacgggccgcgccggcaggccgccgaacgcgcggcgatcaacgcgccgatg
cagggcaccgcggccgatctgatcaagctgtcgatgatcgccgtgcagaagtggctcgac
gaatcgcgcatcggcacgcgcatgatcatgcaggtgcacgacgaactgatactcgaagta
cccgatgaagagctgtcccaggttcgcgagcggctgcccgagctgatgtgcggcgttgca
tcgctgaaggtgccgcttgtcgcggaagtcggcgcgggcgcgaactgggaagaggcgcat
tga

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