Paraburkholderia aromaticivorans: CJU94_08400
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Entry
CJU94_08400 CDS
T05169
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
parb
Paraburkholderia aromaticivorans
Pathway
parb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJU94_08400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parb03019
]
CJU94_08400
Enzymes [BR:
parb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJU94_08400
Messenger RNA biogenesis [BR:
parb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJU94_08400
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ASV98187
UniProt:
A0A248VGM9
LinkDB
All DBs
Position
1:complement(1826705..1828261)
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AA seq
518 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLNSMPAAATGSGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ
IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP
PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH
LIKQYNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQV
LVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQLLK
DIEKLIKRPVPQEVVAGFEPDPTAKPEPILRRGQGGGGGRSPRQGQGAPKRDGARRDGEG
AAKPAQRSGQRPSNGQQQPKPQGAKPAGNGGQPRRDGQRHDDRPRAVAHEGSAAQHAPRK
AQAAKPQGGNPGALLGGAKPRNDAPRGGQPTRSGQRGR
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattctctcggcttgtccgaaccgttggtccgcgctgtccacgaacttggc
tacaccacgccgactccgatccagacgcaagcgattcccgccgtgctcaacggcggcgac
ctgctggccggcgcacaaaccggcaccggcaagaccgccggcttcacgttgcccatcctg
cagcgtcttaactccatgcccgccgctgcaaccggctcgggcaagcgcgtcgtacgcgcg
ctgatcctcacgcccacgcgtgaactggccgcacaggtcgaagaaagcgtgcgcgcctac
ggcaagtatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaacccgcag
atcggcgcgttgcgcagcggcgtggacatcgtcgtcgcgacgccgggccgtctgctcgac
cacatgcagcagaagaccatcgacctgtcgcatctcgagattctcgtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacatcaagcgcgtgctggccaagctgccg
ccgaagcgtcagaacctgctgttctcggccactttctccgacgagatcaagacgctcgcg
gacaatctgctcgactcgccggcactgatcgaagtcgcacgccgcaacaccacggcggaa
acggtcgcgcagaagattcacccggtggatcgcgacaagaagcgcgaactgctcacgcat
ctgatcaagcaatacaactggttccaggtgctggtgttcacacgcaccaagcatggcgcc
aaccgccttgccgagcagttgaccaaagacggcatcagcgcgttggccattcacggcaac
aagagccagtccgcccgcacccgcgcgctcgccgagttcaaggacggcacgctgcaggtg
ctggtcgcgaccgacatcgccgcgcgcggcatcgatatcgatcagttgccgcacgtggtg
aactacgatctgccgaacgtgccggaagactacgtgcaccgcatcggccgcacgggccgc
gcaggtgcgacgggcgaagcgatctcgctggtgtgcgtcgacgaactgcaattgctgaag
gacatcgagaagctgatcaagcgtccggtgccgcaggaagtggtggccggtttcgagccg
gacccgactgcgaagccggagccgattctgcgtcgtggccagggtggtggtggcggtcgt
tcgccgcgtcagggtcaaggcgcaccgaagcgtgacggtgctcggcgtgatggcgaaggc
gccgcgaagccggcgcagcgttcgggtcaacggccgtcgaacggtcaacagcagccgaag
ccgcagggtgcgaagccggccggcaacggcggccagccgcgtcgtgacggtcagcgccac
gacgaccggccacgcgccgtcgcgcatgaaggcagcgccgcgcagcatgcgccacgcaag
gcgcaggccgcgaagccgcaaggcggcaatccgggtgcgttgctgggtggcgcgaagccg
cgcaacgacgcgccgcgcggtggccagcccacgcgtagcggccagcgcggccgttga
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