Paraburkholderia aromaticivorans: CJU94_12270
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Entry
CJU94_12270 CDS
T05169
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
parb
Paraburkholderia aromaticivorans
Pathway
parb03410
Base excision repair
parb03430
Mismatch repair
parb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
parb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CJU94_12270 (recJ)
03430 Mismatch repair
CJU94_12270 (recJ)
03440 Homologous recombination
CJU94_12270 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parb03400
]
CJU94_12270 (recJ)
DNA repair and recombination proteins [BR:
parb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CJU94_12270 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CJU94_12270 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CJU94_12270 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ASV98871
UniProt:
A0A248VK01
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All DBs
Position
1:complement(2681398..2683104)
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AA seq
568 aa
AA seq
DB search
MTRIVTRAASPVDADILTRHGLHPVLARLYAARGVCMPDEIETGLARLVPPVALKGCEDA
AALLADAIQNQRRMLVVADYDCDGATACAVAVRGLRMFGGRIEYLVPNRFEYGYGLTPEI
VALAARSASGKPDLLITVDNGIASVDGVAAANALGIDVLVTDHHLPGDELPAARAIVNPN
QPGCTFPSKCIAGVGVMFYVLLALRAELRRRGAFNDNFPEPRLDGLLDLVALGTVADVVK
LDGNNRVLVAQGLQRIRKGKMQPGIAALFRAAARDARSASGFDLGFALGPRLNAAGRLSD
MSLGIECLTTDDIGRAWDLAQQLDTMNRERREIEAGMQQQALEDLSAIDPEGRTTITLFN
PAWHQGVIGIVAGRLKEKFHRPSFTFALADDSGQTVKGSGRSIAGFHLRDALDLISKREP
GLIVKFGGHAMAAGLTLAAADVPRFTAAFEAVGCEWLSEEALSRTVETDGELEDAYFTPQ
FVEMLDAAVWGQGFPAPVFSGEFDVASQALVKDKHLKLQLVRGRQRFNAIWFNHTDTLPA
RTTVAYRLASDTWNGVSRVQLIVEHAAS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgactcgaatcgttacgcgcgccgcgtctcccgtcgacgccgacatcctcacccgccac
ggcctgcatccggtgctcgcgcgcctctacgcggcgcgcggcgtgtgcatgcccgacgaa
atcgaaaccggcctcgcgcggctcgtgccgccggtcgcgctcaagggctgcgaagacgcc
gccgccctgctcgccgacgcgatccagaaccagcgccgcatgctggtggtcgccgactac
gattgcgacggcgccaccgcctgcgcggtcgccgtgcgcggcctgcgcatgttcggcggc
cggatcgagtatctggtgccgaaccgtttcgaatacggctacggcctgacgcccgagatc
gtcgcgctggccgcgcgcagcgcgtcgggcaaaccggatctgctgatcacggtggataac
ggcatcgccagtgtggacggcgtggcagcggccaacgcgctcggcatcgacgtgctggtc
accgatcaccacctgcccggcgacgagctgccggccgcccgcgcgatcgtcaatccgaat
cagccgggctgcacgttcccgagcaagtgcatcgcgggcgtcggcgtgatgttttacgtg
ctgctcgcgctgcgcgcggaattacgccgccgcggcgcgttcaacgataactttcccgaa
ccgcgcctcgacggcctgctcgatctggtcgcgctcggcacggtcgcggacgtggtcaag
ctcgacggcaacaatcgcgtgctggtcgcgcaggggctgcagcgcatccgcaaaggcaag
atgcagccgggcatcgccgcgctgtttcgcgccgccgcgcgcgacgcccgcagcgcgtcg
ggcttcgatctcggcttcgcgctcgggccgcggctgaacgcggcgggccgactgtcggac
atgtcgctcggcatcgaatgtctgactactgacgacatcggccgcgcctgggatctcgcg
cagcaactcgacacgatgaaccgcgaacgccgcgaaatcgaagccggcatgcagcagcag
gcgctcgaagacctctcggcgatcgaccccgagggccggaccaccatcacactgttcaat
cccgcgtggcatcagggcgtgatcggcatcgtcgcggggcggctgaaggagaaattccac
cgcccctcgttcaccttcgcgctcgccgacgacagcggccagaccgtcaaaggctcgggc
cgctcgatcgcgggtttccatctgcgcgacgcgctcgacctgatctcgaagcgcgaaccg
ggcctgatcgtcaagttcggcggccacgcaatggccgcgggcctcacgctcgccgccgcc
gacgtgccgcgctttaccgccgcgttcgaagcggtcggctgcgaatggctgtccgaagag
gcgctttcgcgcacggtggaaaccgacggcgagctcgaggacgcttacttcacgccacag
ttcgtcgaaatgctcgatgccgccgtgtggggccaaggttttccggcgccggtgttttcg
ggcgagttcgatgtcgcctcgcaggcgctggtgaaagacaagcatctgaagctgcaactg
gtgcgcggccgccagcgcttcaacgcgatctggttcaatcacaccgacaccctgcccgcg
cgcaccacggtcgcctatcgtctcgcgagcgatacgtggaacggcgtgtcgcgcgtgcaa
ctgatcgtcgaacacgcggcgagctga
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