Paraburkholderia aromaticivorans: CJU94_13170
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Entry
CJU94_13170 CDS
T05169
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
parb
Paraburkholderia aromaticivorans
Pathway
parb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJU94_13170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parb03019
]
CJU94_13170
03400 DNA repair and recombination proteins [BR:
parb03400
]
CJU94_13170
Enzymes [BR:
parb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJU94_13170
Messenger RNA biogenesis [BR:
parb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJU94_13170
DNA repair and recombination proteins [BR:
parb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CJU94_13170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
AAA_30
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ASV99018
UniProt:
A0A248VJ57
LinkDB
All DBs
Position
1:2889849..2891636
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AA seq
595 aa
AA seq
DB search
MTVDQRLRSMRKTMRDMFGIARLRVGQEDIIRSVLERRDTLATMPTGAGKSLCYQLPALH
LDGMTLVVSPLIALMKDQADKLLAAGIDCTLVDSTLRSRAEREALQRIAAGESGIVFVTP
ERLAQPAFIDIVRCRPEHRVGLVVVDEAHCVSQWGHDFRPAFLEIASAVKAVGRPPVLAL
TATATGAVLDDIVHSLGLRDPRVVRTGTWRENLRYRVVQVGAAGDRDSAMRAVQAKREQL
LELSASLSGTGIVYAATVADVERIYGWLVEAGEPVSRYHGRLAPKAREAAQEQFMSGATR
LMVATNAFGMGIDKADIRFVIHYQMPGSLDAYYQETGRAGRDGEPADCVLLFDLNDRRIQ
QFFLAGRYPSPELAQRVYDALAAYGNRNANGATLAALKHELPEVGGGRLEVALNMLVDAR
IAGRSRQRRYRLLQAASGEDRTGTPRESVAKAAAQFEQMSAHDKDTLQKMIDYAQTGQCR
WRAILDYYGDTPQMKRCGVCDNCVEPPQIDGGRVCTAAPTFGAPAPAVPPAREASEVPEA
PEAPKWTPGDPVRVPRYGRGEVALASGDQVAVRFPDGRTRTFMSSYVRAARRSPD
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcgaccaacggcttcgaagcatgcgcaagaccatgcgggatatgttcggcatc
gcgaggttgcgtgtcggccaggaagacatcattcgcagcgtgctggaacggcgcgatacg
ctcgccaccatgccgacgggcgccggcaagtcgctgtgctatcaactgcccgccctccat
ctggacggcatgacactcgtcgtatcgccgctgatcgcgctcatgaaggatcaggcggac
aaactgcttgcggcgggcatcgattgcacgctggtcgacagcacgctgcgcagccgcgcg
gagcgcgaggcgctgcaacgcattgcggcgggcgagagcggcattgtgttcgtgacgccg
gagcgcctcgcgcaaccggcgttcatcgacatcgtgcgctgccgccctgagcatcgagtc
gggctcgtcgtggtcgacgaagcgcattgcgtgtcgcaatgggggcacgacttccggccg
gctttcctcgaaatcgcgagtgcggtcaaggcagttggccggccgccagtgctggcgttg
accgcgacggcgacgggcgcggtgctcgatgacattgtccattcactgggcctgcgtgat
ccgcgcgtcgttcgcaccggcacgtggcgtgaaaacctgcgctatcgcgtggtgcaggtc
ggcgcggcgggcgaccgggacagtgcgatgcgggccgtgcaagccaagcgcgaacaactg
ctcgaactgagcgcctccctgagcggcaccggtatcgtgtacgccgcgacggtggcggac
gtagagcgcatctacggctggctcgtcgaggcgggcgagccggtctcgcgctatcacggc
cgcctcgcgcccaaggcgcgcgaggcggcgcaggagcaattcatgtccggcgcgacgcgc
ctgatggtcgccaccaacgcgttcggcatgggtatcgacaaggcggacatccgctttgtg
atccactatcagatgcccggcagcctcgacgcttattaccaggaaacaggccgggcggga
cgcgacggcgaaccggcggactgcgtgttgctgttcgatctcaacgaccggcgcatccag
cagttctttctggcgggccgctatccgagccccgaactggcgcaacgtgtgtacgacgcg
ctggcggcatacggcaaccggaacgccaacggcgccacgctcgctgcgctcaagcacgag
ttgcccgaagtcggcggcggcaggctggaggtcgcgttgaacatgctggtggacgcccgc
atcgccggacgcagccggcagcgtcgttaccggctgctgcaggcggcgtccggtgaagac
cgcaccgggacgcctcgcgagtcagtggcgaaggccgccgcgcaattcgagcagatgagt
gcccacgacaaggacaccttgcaaaagatgatcgactacgcacagactggtcaatgccgt
tggcgcgcgattctcgattactacggggatacgccgcaaatgaaacgctgcggcgtgtgc
gacaactgcgtcgagccaccgcagatcgatggggggcgagtctgcacggctgcgccaacc
ttcggcgcgccggcgcccgcggtcccgcccgcacgcgaggcgtccgaggtgcccgaggcg
cccgaggcgcccaaatggacgcccggcgatccggtgcgcgtgccgcgatacggccgcggc
gaagttgcgctggcgagcggcgaccaggtggcggtgcggttccccgacggccgtacgcgc
accttcatgtcgagctatgtgcgagcggcgcggcgaagcccggattag
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