Parabacteroides sp. CT06: CI960_05555
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Entry
CI960_05555 CDS
T05011
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
parc
Parabacteroides sp. CT06
Pathway
parc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CI960_05555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parc03019
]
CI960_05555
03400 DNA repair and recombination proteins [BR:
parc03400
]
CI960_05555
Enzymes [BR:
parc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CI960_05555
Messenger RNA biogenesis [BR:
parc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CI960_05555
DNA repair and recombination proteins [BR:
parc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CI960_05555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF6958
Motif
Other DBs
NCBI-ProteinID:
AST52852
UniProt:
A0A223HKB8
LinkDB
All DBs
Position
complement(1281635..1283551)
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AA seq
638 aa
AA seq
DB search
MDVYHKILEKYWGYPAFRPLQEDIIHSVCAGKDTLGLMPTGGGKSITFQVPALAMEGICI
VVTPLIALMKDQVENLRRVGIKATAVYSGMSRQEIITQLENCIFGGYKFLYVSPERLSTD
IFRVKMEAMQVCLLVIDESHCISQWGYDFRPSYLNIAEIRDLLPGVPVLALTATATPEVV
NDIQERLRFKEKNVFQKSFARKNLAYIVRKTEDKLNTLVYILGKVPGTAIVYVRNRKRTK
EIALMLQQAGISADFFHAGLNRDEKELRQARWKNNECRVIVSTNAFGMGIDKPDVRLVVH
MDMPGSLEEYYQEAGRGGRDEKKAFAVALCSSTDSAKLKKRLADEFPDKEFIYRVYEALG
NYYQIAVGYGLDTVHDFSLTDFCSAYKFSLLQAHHALKILGLSGYIEYTEEVDNASRLMF
TATRDELYRYLSENKRTDEVIQTILRSYTGLFADYVYIDESVIATRARVTPHEVYETLVG
LSRYRIVNYIPHKKTPLIIYTQTREEQRYLSIPRSAYEERKERFGKRIEKVLEYINEERV
CRSRMLLSYFGEEDSAPCGCCDVCLSKHESQLMNWEFNAIRESLIKILAGESPIPVKELI
EKLPFPQEKILTAIRFLADQDPRFTLSDGYLSHEDSAK
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
gtggacgtttaccataagatattagagaagtattggggataccctgcttttcgccccttg
caggaggatattatccattccgtctgtgccggaaaagatacgcttgggctgatgcctacg
ggtggtggtaaatccatcacctttcaggtgccggcattggcgatggaggggatttgcatc
gtcgtcactcccttgatcgcattgatgaaagaccaagtggagaacttacgccgggtcggc
atcaaggctacggccgtttattcgggcatgagccggcaagagatcatcacgcaactggag
aattgcatcttcggggggtataagttcttatatgtctccccggagcggcttagtacggat
attttccgggtcaagatggaggccatgcaggtttgtctgctggtaatcgacgagagtcac
tgtatctcgcaatggggatatgatttccgtccttcttatctcaatatcgctgagatccgg
gacttattgccgggtgttccggtattagccttgaccgccacggctaccccggaagtggtg
aatgacatacaagagcgtctgcggttcaaggagaagaacgtatttcaaaagagcttcgcc
cgcaaaaatctggcttatattgtccggaagacggaggataagttaaatacactcgtttat
atattgggaaaagttccgggtacggccatcgtatatgtccgcaaccggaaacgcaccaag
gagatcgccctcatgctgcaacaggcgggtatctccgccgatttcttccatgccgggtta
aaccgtgacgagaaagaactgcgtcaggcccgttggaaaaacaacgagtgccgggtaatc
gtatcgaccaacgcttttggtatgggtatcgataagccggacgtgcgattggtcgtgcat
atggatatgccgggatcgttggaggaatattatcaagaggccggacgcggggggcgtgat
gagaagaaagccttcgccgtggctctttgttcctccacggatagcgccaagctaaagaaa
cggctggcggatgagtttccggacaaggagtttatctatcgggtctatgaggcgttgggt
aattattaccagatcgccgtagggtacgggctagatacggtacacgatttctcattgacg
gatttctgttccgcttataagttctctttattgcaagcgcatcatgccttgaagatcctt
gggctatcgggctatatcgaatatacggaggaggtagacaacgcttcccgcctgatgttc
acagctacccgtgacgagctttacaggtatttaagtgagaacaagcgaacggatgaggtg
attcagacaatcttgcgttcttacaccgggttattcgcagattatgtttatatagatgag
agcgtaatcgccacccgtgcgagagtgacacctcacgaggtgtatgagaccttggtaggt
ttatccagataccggatcgtaaactacatcccgcataagaaaaccccgttgattatctat
acccagacccgggaggaacagcggtacctttccataccccgctcggcgtatgaggaacgc
aaggagcgtttcgggaaacggatcgagaaggtgctggaatatatcaacgaggagcgggta
tgccgtagccgcatgctcctatcctatttcggcgaggaagattccgccccttgtggctgt
tgcgacgtatgcctatcgaagcatgaatcacagcttatgaattgggaattcaacgctatc
cgggaaagtctcataaagatattggccggggaatcccctatccccgtgaaagaacttatt
gagaaattacctttccctcaagagaaaatcctcacggccatccgctttctggcggatcaa
gatccccgattcacattaagcgacggctatctatcgcacgaggattcagcaaaatag
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