Parabacteroides sp. CT06: CI960_05560
Help
Entry
CI960_05560 CDS
T05011
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
parc
Parabacteroides sp. CT06
Pathway
parc03410
Base excision repair
parc03430
Mismatch repair
parc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
parc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CI960_05560 (recJ)
03430 Mismatch repair
CI960_05560 (recJ)
03440 Homologous recombination
CI960_05560 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parc03400
]
CI960_05560 (recJ)
DNA repair and recombination proteins [BR:
parc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CI960_05560 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CI960_05560 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CI960_05560 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
SOGA1-2-like_CC
zf_Tbcl_2
Toprim
Motif
Other DBs
NCBI-ProteinID:
AST52853
UniProt:
A0A223HK99
LinkDB
All DBs
Position
complement(1283561..1285285)
Genome browser
AA seq
574 aa
AA seq
DB search
MINKWNFQTPSEEELHKRDQLVAELGFSPVICLLLVQRGITSIEEAKKFFKPSLNDLHDP
FLMPDMDKAVRRLNKALGNKEKILIYGDYDVDGTTAVSLVFKYLRPYSSTLDFYIPDRYD
EGYGISYKGIDYAAENGVSLVISLDCGIKAIEKIEYAKEKGIDFIICDHHMPDATLPDAV
AVLDAKRSDSIYPYEHLSGCGVGFKFMQAFAKSNNFPFSDLEKLLELTAVSIASDIVPIT
GENRILAYYGLKQLNSNPSLGLKGIIDICGLTGKEITISDIVFKIGPRINASGRMMNGKE
AVELLLSKDSASAREKSESINQYNEERRELDKKITDEANAVIDEVENMDDRKAIVVYNPG
WHKGVIGIVASRLTEKYYRPAVVLTKSSELITGSARSVTGFDIYKAIESCRDLLENFGGH
TYAAGLSLREENLEAFTERFLKIASEEIIPEQMIPQIDIDAILDLKEINQKFVNDLKKMS
PFGPDNQKPVFCSLGVKDYGTSKLVGKELEHLKLELIDGNSSTPMHAIAFGMHRYNDHIK
GMKPFNICYTVEENTYNGNTSIQLMIKDIKPDDI
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgattaacaaatggaactttcaaaccccatcagaagaagagttacataagagagaccaa
ttggtggctgaattaggattcagcccggtgatctgtctcttgctcgttcaacgaggtatc
acttcgatcgaagaggcgaagaaattctttaaacccagcttgaacgatttgcacgacccg
ttccttatgccggatatggataaggcggtgaggcgcttgaacaaagccttggggaataaa
gaaaagattttgatctacggcgattacgacgtggatggaacgacagcggtatcgctcgtc
ttcaagtatttaagaccttactcgtctaccttggatttctatatcccggaccggtacgac
gaggggtacggtatctcttacaagggtatcgattatgccgccgagaacggcgtgtcgctg
gttatctcgctggattgcggtatcaaagcgatcgagaagatcgagtacgccaaggagaaa
ggcatcgactttattatttgcgaccaccatatgccggacgccactttgccggacgctgtc
gccgtattggatgccaagcgctcggattctatctatccgtatgagcacttatcgggttgc
ggagtaggattcaagttcatgcaggcgttcgccaagagcaataatttcccgttctcggat
ctggagaagttgttggagctgacggcggtcagtatcgcctcggatatcgtcccgattacg
ggagagaaccgcatcctcgcctattacgggctgaagcaattgaacagcaaccccagcctc
gggctgaaagggattatcgatatctgcggattgaccggaaaggagatcacgatcagtgat
atcgtcttcaagatcggtccccgtatcaacgcttccggccgtatgatgaacgggaaggag
gcggtggaactgctactgtccaaggatagcgccagtgcccgggagaagagcgagagcatc
aaccaatataatgaggaacgccgggaattggacaagaagatcaccgacgaggctaacgct
gtcatcgacgaagtagagaacatggatgaccggaaggcgatcgtggtgtataacccggga
tggcacaaaggcgtgatcggtatcgtagcgtcccgtttgaccgagaagtattaccgtccg
gcggtcgttcttaccaaatcgtccgagttgatcaccggatcggcacgttccgtaacaggc
ttcgatatttacaaggcgatagagagttgccgggatttattggagaatttcgggggacat
acctacgccgccgggctttcccttcgggaggagaacctagaggcattcaccgagcgtttc
ttgaagatcgcatccgaggagatcataccggagcagatgatcccgcagatcgatatcgac
gctatcttggatttgaaagagatcaaccagaagttcgtgaacgacctaaagaagatgagc
ccgttcgggccggacaaccaaaagcccgtattctgttcgcttggcgtaaaggactacggc
accagtaagctcgtgggtaaggaactggagcatctcaagctggaattgatcgacggaaac
tcaagcacccccatgcacgccatcgctttcggcatgcacaggtacaacgaccatatcaag
ggtatgaagcctttcaacatctgctacacggtggaggagaacacctacaacggcaacacc
tctatccagctgatgatcaaagacatcaaacccgacgatatatga
DBGET
integrated database retrieval system
