Parabacteroides sp. CT06: CI960_17500
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Entry
CI960_17500 CDS
T05011
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
parc
Parabacteroides sp. CT06
Pathway
parc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
parc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CI960_17500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
parc03021
]
CI960_17500 (rpoC)
03400 DNA repair and recombination proteins [BR:
parc03400
]
CI960_17500 (rpoC)
Enzymes [BR:
parc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CI960_17500 (rpoC)
Transcription machinery [BR:
parc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CI960_17500 (rpoC)
DNA repair and recombination proteins [BR:
parc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CI960_17500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Apocytochr_F_C
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
AST55021
LinkDB
All DBs
Position
complement(3935884..3940179)
Genome browser
AA seq
1431 aa
AA seq
DB search
MAFRKENKIKSNFSKITIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIHLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDSIIYYERYVVIQPGCVDTVGELDLLSEEEYLDILDSLPRENQLLEDTD
PNKFIAKIGAEAVYDLLARLDLDSLSYELRHRANTDTSQQRKNEALKRLQVVESFRASRG
RNKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAPEV
ILRNEKRMLQEAVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVDYS
ARSVIVVGPELKMHECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIVDRKEPVVWD
ILEYVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDGDQMAVHL
PLGNEAVLEAQMLMLASHNILNPANGAPITVPSQDMVLGLYYITKLRKGTQGEGLTFYGP
EEATIAYNEKKLDIHAPIHVYVEDLDENGNLVKTMVETSVGRLMVNEFVPKEIGYVNEVL
GKKSLRDIIGRVIKACGVARTAQFLDDIKNLGYYMAFKGGLSFNLADVLIPPEKDELVQK
GYDEVEQIMANYNMGFITNNERYNQIIDTWTHVNSNLSNILIKQLTADNDGFNSIYMMMD
SGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQIIENPILSNFKEGLSVLEYFISTHGARK
GLADTALKTADAGYLTRRLVDVSHDVIVNEEDCGTLRGLVCTELKNNEEVIASLYERILG
RVSVHDVIHPITGEVIVRSGEEIREDAAKAIQDSPIESVEIRSVLTCESKKGVCAKCYGR
NLATNRMVQKGEVVGVIAAQSIGEPGTQLTLRTFHVGGIASNIATENSITSKYDGILEID
ELRAVEAVDEVSGKKHLVVVSRLAEMRIVDPNTKIVLLTHNIPYGSKLFFNNGDSIKKGD
VIIEWDPFNAVIVSEVSGKIEFESLVENVTYKVESDETTGLKEKIIIESKDKTKAPAAHI
VDENGNYLKNYSLPLGAHVVKDNGDVVKAGEVLVKIPRAVGKAGDITGGLPRVTELFEAR
NPSNPAVVSEIDGEVGFGKIKRGNREITVTSKLGEVKKYMVPLSKQLLVQENDYIRAGMP
LSDGATTPSDILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVEVVDP
GDTRFLEQQIVDKLEVMDENDRIWGKKVVTDPGDSQTLQAGQIVTARKLRDENSMLKRRD
LKLVEVRDAIPATANQILQGITRAALQTNSFMSAASFQETTKVLNEAAINGKVDRLEGLK
ENVICGHLIPAGTGQREFDKLIVGAKDEFDRIFANRKNVVDFNAMDKDDEE
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggcctttagaaaagaaaacaagataaagagtaacttttcaaaaataaccatcggtctg
gcatcccctgaggagatcctagagaactccagcggtgaggttttgaaaccggaaacaatt
aactatcgtacgtataagcctgagcgtgacggtttgttctgtgagcgtatctttggtccg
atcaaggactatgagtgccattgcggtaagtacaagcgtatccgttacaaaggtattgtc
tgcgatcgttgtggagtggaagttacggaaaagaaagttcgtcgtgaacgtatgggacac
atccatttggtggttcctgttgcccatatttggtatttccgttctttgcctaataaaatc
ggttacttgctaggtcttcctaccaagaaactggattccatcatctattacgaacgctac
gtcgtgatccagccgggttgcgtagacacggtcggtgagttagacctattatctgaggag
gaatatctggatattttggatagccttccaagagaaaatcaattgctagaggatacggat
ccgaataagttcatcgctaagatcggcgctgaggctgtttatgatctgttggctcgcttg
gacttggattctctttcttatgagttgcgtcaccgtgcgaacacggacacatctcaacag
agaaagaacgaggccttgaaacgccttcaggtggttgagtcttttcgtgcgtccagaggt
cgtaacaaaccggaatggatgatcatgaaggtgatcccggtgatccctcccgaactgcgt
ccgttggttccgttggacggtggccgtttcgctacttctgacttgaatgatttatatcgt
cgtgttattatccgtaataaccgtttgaaacgattgatcgatattaaggctccggaagtg
atcttacgtaatgagaaacgtatgcttcaggaggccgtggactctttgtttgacaactct
cgtaaatcgagcgctgttaagacagacgccaatcgtccgttgaagtccttgtccgacagt
ttgaaaggtaaacaaggtcgtttccgtcagaacttgttgggtaagcgtgttgactactcc
gctcgttcggttattgtcgtaggtccggaattaaagatgcacgagtgcggtttgccgaag
aatatggctgccgagctttataagcctttcgttatccgtaaattgatcgaacgcggtatc
gtgaagacggtgaaatctgccaagaagatcgttgaccgtaaggaaccggttgtttgggat
attttggagtacgtaatgaaaggtcacccggtattattgaaccgtgccccgacattgcac
cgtttgggtatccaagcgttccagccgaaattgatcgagggtaaggctatccagttgcac
ccgttggcatgtacggcattcaacgccgacttcgacggtgaccagatggctgttcacttg
ccgttaggtaatgaggctgttttggaagctcaaatgttgatgttggcttcacacaatatc
ttgaacccagcgaatggtgctcctattaccgtaccttctcaggatatggtgcttggtttg
tattatattaccaagttgcgcaagggtacacaaggcgaaggtttgactttctatggtccg
gaagaggctacgatcgcttacaatgagaagaagttggatatccatgctccgatccatgtt
tacgtggaggatttggatgagaacggcaacttggtgaagacgatggttgagacttccgtt
ggacgtttgatggtaaacgagttcgttccgaaagagattggttatgtaaacgaggtgttg
ggcaagaagtctcttcgcgacatcatcggtcgggtaatcaaggcttgtggtgtggctcgt
accgctcagttcttggacgatatcaagaacttgggttactatatggcattcaagggtggt
ttgtccttcaacttagcggacgttctgatcccgcctgaaaaggatgagttggttcagaag
ggatacgatgaggttgagcagatcatggctaactataatatgggtttcattaccaacaac
gagcgttataaccagattatcgatacttggacacacgttaatagtaacttgtctaatatc
ttgattaagcaattgacggcggataacgatggattcaactcaatctatatgatgatggat
tccggtgcccgtggttcgaaggagcagattcgtcagttgtccggtatgcgtggtttgatg
gcgaaaccgcagaagagtggtgcagaaggtggtcagattatcgagaacccgatcctttct
aactttaaggaaggtttgtccgtgttggagtactttatctctactcacggtgctcgtaaa
ggtttggccgataccgctttgaagactgccgacgccggttacttgactcgtcgtttggtt
gacgtctctcacgacgtgatcgtaaacgaggaagactgtggtacattgcgtggcttggtt
tgtacggaattgaagaataacgaggaggtgatcgcttccttgtatgagagaatcttaggt
cgtgtatctgttcacgatgtgatccatccgattacgggcgaggttatcgttcgttccggt
gaggaaatccgtgaggatgccgctaaggcaatccaagactctccgatcgagagcgtcgag
attcgttccgtattgacttgtgagtctaagaagggtgtctgcgctaagtgctatggacgt
aacttggctacgaaccgcatggttcagaagggtgaggttgtcggtgtaatcgccgcacag
tctatcggtgagccgggtacacagttgacgttgcgtacattccacgtcggtggtatcgca
tccaacatcgctacagagaatagtattacatctaaatatgatggtattttagagatcgac
gagcttcgtgctgttgaggcggtagacgaggtgagcggaaagaaacatttggtagtagta
agccgtttggctgaaatgcgcattgttgatccgaacacgaagattgtgttgttgactcat
aatataccttatggttctaagttgttcttcaacaacggtgactcaattaagaagggtgac
gtgatcatcgagtgggacccgttcaatgccgtaatcgtgtcagaggtttccggtaagatc
gagttcgagagtttggtagagaacgtgacttacaaggttgagagtgatgagactaccggt
ttgaaggagaagatcatcatcgagtctaaggataagacgaaggctccggccgctcatatc
gtggatgagaatggtaattacttgaagaactactctttgccgttgggcgctcacgtcgtg
aaagacaatggtgatgtagtgaaagctggtgaggttttggttaagatccctcgtgccgta
ggtaaggccggtgatatcaccggtggtcttcctcgtgtaaccgagttgttcgaggctcgt
aacccgtctaaccctgctgtcgtatctgagatcgacggagaggtaggattcggtaagatc
aaacgtggtaaccgcgagatcaccgtaacgtctaagttgggtgaggttaagaaatatatg
gttcctctgtctaaacaattattggttcaggagaacgactatatccgtgcgggtatgccg
ctatcagacggtgctaccactccttcggatatcttggcgatcaaaggtccgacggctgta
caggaatatatcgtgaatgaggttcaggatgtataccgtctacagggtgtgaagatcaac
gataagcacttcgaggttatcgttcgtcagatgatgcgtaaggtagaggtggttgatccg
ggagatactcgcttcttggagcagcagattgttgataagttggaggtaatggacgagaac
gatcgtatctggggcaagaaagttgttaccgatccgggagattctcagacattgcaggcc
ggacagatcgtgactgcacgtaagttgagagatgagaatagtatgttgaaacgccgtgat
cttaagttggtcgaggtacgtgacgctattccggctacagccaaccagatccttcaaggt
atcacacgtgccgctttgcagacgaacagctttatgtccgccgcatctttccaagagacg
acgaaagtattgaacgaggctgctatcaacgggaaggtagatcgtttggaaggtttgaaa
gagaacgttatctgtggtcacttgattcctgccggtaccggtcagcgtgagtttgataag
ctgatcgtaggcgcaaaggatgagttcgatcgtatcttcgctaatcgcaagaacgtggtt
gatttcaatgccatggacaaagatgatgaagaatag
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