Parabacteroides sp. CT06: CI960_17970
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Entry
CI960_17970 CDS
T05011
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
parc
Parabacteroides sp. CT06
Pathway
parc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
parc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CI960_17970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
parc03021
]
CI960_17970
03400 DNA repair and recombination proteins [BR:
parc03400
]
CI960_17970
Enzymes [BR:
parc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CI960_17970
Transcription machinery [BR:
parc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CI960_17970
DNA repair and recombination proteins [BR:
parc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CI960_17970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AST55101
LinkDB
All DBs
Position
complement(4059204..4060196)
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVLMLEADNFFGKFEFRPLEPGYGITIGNALRRILLSSLEGFAITSIKID
GVDHEFGTIPGVIEDVTNIILNLKQVRFKHIVDDIENEKVSITVSGSEVFKAGDIGKQLT
GFEILNPDLVICRLDPTASFQIELTINKGRGYVPADENRDPNADIHVIAIDSIFTPIRNV
KYSIENFRVEQKTDYEKLVLEIATDGSIHPKEALKEAAKILIHHFMLFSDEKIAIETADT
EGNEEFDEEVLHMRQLLKSKLADMDLSVRALNCLKAADVETLGELVKFNKNDLLKFRNFG
KKSLTELDELLESLNLSFGMDITKYKLDKE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgatattagcatttcaaaaacccgataaagtattaatgttggaagcggacaatttc
ttcggaaagtttgaatttcgtccgttggaacccggctatggtattacaataggtaatgct
ttacgtcgtattctcctgtcgtcacttgaaggttttgctattacatccattaagatcgac
ggggttgaccatgaatttggtacaatcccgggtgttatcgaggatgtgacaaacattatc
ttgaatctgaagcaagttcgtttcaagcatatcgtagacgacatcgagaatgaaaaagtg
agtattactgtttcgggttcggaagtgttcaaagccggtgatattggtaagcaactgact
ggattcgagatattgaatcctgatttggttatttgccgcttggatccgaccgcaagtttc
cagattgaattgactattaataaaggtcgcggttatgtacccgcagatgagaacagagac
ccgaacgcagatatacatgtgatcgctatcgactctatcttcactccgatacgtaacgta
aaatattcaatcgagaacttccgtgttgaacagaagacggactacgagaagttggttctt
gaaatagccacagatggttctattcatccgaaggaagcgttgaaggaagcagcgaagatt
ctgattcatcatttcatgttgttctcagatgaaaagattgcgatcgagacagcggatact
gaaggcaatgaagagttcgatgaagaagtacttcatatgcgtcagttgcttaagagcaag
ctggctgatatggacctttccgttcgtgcattgaattgcttaaaggccgcagatgttgaa
acactaggtgagttggttaagttcaataagaatgatttgttgaaattccgtaacttcggt
aaaaagtcgctcactgaacttgatgaactgcttgagagcttgaacctttcattcggtatg
gatatcacaaaatataaattagataaagagtaa
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