Parabacteroides sp. CT06: CI960_20765
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Entry
CI960_20765 CDS
T05011
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
parc
Parabacteroides sp. CT06
Pathway
parc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CI960_20765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parc03019
]
CI960_20765
03009 Ribosome biogenesis [BR:
parc03009
]
CI960_20765
Enzymes [BR:
parc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CI960_20765
Messenger RNA biogenesis [BR:
parc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CI960_20765
Ribosome biogenesis [BR:
parc03009
]
Prokaryotic type
rRNA helicases
CI960_20765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
RecG_N
Motif
Other DBs
NCBI-ProteinID:
AST56245
UniProt:
A0A223HUY0
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All DBs
Position
4747006..4748781
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AA seq
591 aa
AA seq
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MGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLPILQKINISQYQPQALILCP
TRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLKRGVHVVVATPGRLIDLMNR
KTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNMLLFSATMPKEIASITKKYM
KDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLALKRLADYYPNIYGIIFCRTRKETQEIA
DKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLVATDVAARGLDVDDLTHVINYGL
PDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREIERIINKKFDKGKMPTGEQICEK
QLFNLVDQIEKVKVNEEEIASLMPSIYRKLEWLDKEDIIKRVVSLEFNRMIDYYKDNDDI
EVVDESAPRERGKRGGRGEAEEGYTRFFINFGKTDELTPPQLIELVNKCVPGKVRIGRID
LRDNFSFFEVEEGEANRVMDSMNGFEVDGRRISVEPAQAKGEGGKGSRGSRGGSRSGNGF
RDRRDSGRKGRDSRRESDRGDRGGRRSGRGDDKPKRKFYEDAPRGKKKRSK
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgggctacgaatcgcccatgcccgtacaggaagaagtgattcctttcttactgggagaa
gataacgacgtaatcgcattggcacaaacaggaaccggcaagacagccgcttacggcctg
ccgatcctgcaaaagatcaatatctctcaatatcagcctcaagcgcttatcctttgtccg
acacgcgagctttgcctacagatagcggacgatttgaacgattattctaaatacatcgat
aacctgaaggttctccctgtatacggaggttccagtatagagagccagatcaagacactg
aagagaggcgtacacgtggtagtggctaccccgggacgtttgatcgacttgatgaaccgc
aagacggttgacttaagcaacgtaaagaacgtcattcttgatgaggcggacgagatgttg
aacatgggtttcaccgacagtatcaacgagatcttggcggctataccggaaaaccgcaat
atgctgctcttctccgctaccatgccgaaagagattgcctctatcaccaagaaatacatg
aaggacccgaaagagatcgtcattggcaggaagaacgagggaaacaagaatatccgcgat
atctattacatggttcgtgcgcaggataaatatctcgcgttgaaacgtctagccgattat
tacccgaacatctacggtatcatcttctgccgtacccgtaaggagacacaggagatcgcc
gataaattgattcaagacggctataacgccgactccttgcacggcgagctgagccaagcg
caacgtgattacgtgatgcagaagttccgtatcaagaatatccagttattggtcgctacg
gacgtagccgcacgtggtttggacgtggatgacttaacccatgtaatcaattacggtctg
ccggatgaggtagaatcttatacccaccgccgcggacgtacgggccgtgcgggaaaaacg
ggtatcgctatctctatctgccacgtaagggaaaaaggcaagatccgcgagatcgaacga
atcattaacaagaaattcgataaaggcaagatgcctaccggtgagcaaatctgtgagaag
caattgttcaacttggtggaccagatcgagaaagtgaaagtgaacgaggaggaaatcgct
agtttgatgccttctatctaccgtaaattggaatggctggataaggaagatatcatcaag
cgtgtcgtatccttggagttcaaccggatgatcgactattataaagataacgatgatatc
gaggttgtagacgagagcgccccaagagaaagaggcaaacgtggtggtagaggcgaagcg
gaagaaggctacacccgtttctttatcaactttggaaagacagacgagcttacacctcct
caacttatagagttggttaataagtgtgtaccgggtaaggttcgtatcggtcgtatcgac
ttacgtgataatttctcattcttcgaggtagaagagggagaagccaaccgtgtcatggac
tcgatgaacggcttcgaggtagacggacgacgtatctccgtagaaccggcgcaagcgaaa
ggcgaaggtggtaaaggcagtcgtggtagccgtggaggtagccgtagcggaaacggtttc
agagaccgacgggatagcggtagaaaaggcagagatagccgtcgggaaagcgaccgtgga
gaccgtggcggtagacgttccggccgtggcgatgacaaaccgaagcgtaaattctatgag
gacgctcctcgtggaaagaaaaaacgcagtaaataa
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